Avir001312.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00001140:63727-73757[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.05 1.6 9.3 0.7 2 23 150 172 150 172 0.90
2 19 2.1 66 4.2 0.1 12 23 197 208 193 208 0.88
3 19 1.9e-05 0.0006 20.1 2.9 2 23 232 253 231 253 0.97
4 19 3.9e-07 1.2e-05 25.4 3.9 1 23 259 281 259 281 0.99
5 19 0.0002 0.0063 16.9 2.9 1 23 287 309 287 309 0.98
6 19 0.0024 0.074 13.5 5.5 1 23 315 337 315 337 0.96
7 19 3.5e-05 0.0011 19.3 3.9 1 23 343 366 343 366 0.96
8 19 6.4e-06 0.0002 21.6 5.0 1 23 372 394 372 394 0.99
9 19 1.2e-06 3.9e-05 23.9 2.5 1 23 400 422 400 422 0.99
10 19 3.1e-06 9.7e-05 22.6 3.8 1 23 428 450 428 450 0.99
11 19 3.2e-05 0.001 19.4 2.3 1 23 456 479 456 479 0.94
12 19 6.2e-07 1.9e-05 24.8 4.7 1 23 485 507 485 507 0.99
13 19 1.8e-06 5.7e-05 23.3 2.6 1 23 513 535 513 535 0.99
14 19 2.4e-07 7.5e-06 26.1 2.8 1 23 541 563 541 563 0.99
15 19 7.1e-07 2.2e-05 24.6 6.3 1 23 583 605 583 605 0.99
16 19 9.6e-07 3e-05 24.2 4.3 1 23 611 633 611 633 0.98
17 19 9.3e-06 0.00029 21.1 4.1 2 23 654 675 653 675 0.98
18 19 9.8e-06 0.00031 21.0 3.4 1 23 681 703 681 703 0.99
19 19 2.6e-07 8e-06 26.0 3.5 1 23 709 731 709 731 0.99

Sequence Information

Coding Sequence
ATGGAAGTTTTCCAAGATGCATTAAATACGTTAATAAATAATAAAATAGGAAATGATTCTAACGATTTGTTATCCCATATTAAAACCGAAGAACCTGATACTTTCGAAGAATCTAATCTTGAACTAGAGAACTTGCATCAATTTGATCTCTGTAAGATCAAAACGGAAAGTTATGTAGAAAAAGTTTCTCCAACTAAAAGTGATCTCTTAATGAACAGAGAAAATATAAAAATCGAAAATATCGATTCAAATGAGGGTATGGAAGAAAGAAAATGTGATATCGAAATTAATACAGAAATTACACAGCTTCCATTTGATTTTCCTGTTTGTAGAAATGATTTGGTTGAAAATCGACAAAAAGTACAAACAATCAACATGTATTCTAGGAAAAAACGTTTCCTCTCTGCGACAAAAAAATGGCAAACTCACTTTGGAAAACTGAATGGAACATGTTACTCTTGTGGAAAATTTTTCTATGATAAAGTGCTATTTTTAAATCATTTTTATATTTACCACTGTTTAGCTAATTGTAAAAAATCTGTTATCTTGGGAAGAAACAATTCTGCTACAAAACACGCTAAAGTAGAAGATCTTCGTAATTTAAACGAACATATGCAAACTCACACTGGACAAATATCCACATTTTATAACCAAAAAATACATTCGCAAACTCACTTTAGTGAAAATTCTTTAAGTTGTAATATTTGTTTAAAAAATTTTACAAAACAAAGTCGTTTAAAAAAACATATGAGATCCCACTCTGGCGACAAACCGTTTAAATGTGAAATTTGTTCAAAAAGTTACAAACAATCCAGTCATTTAAAAAGCCATATGATAACGCACACCGGTGAAAAACCTTTCAGATGTGAAATTTGTTTAAAATGCTTCCCATTTCAAAATAAGTTAAAAGATCATATTAAAATTCACTCTGATGAGAGACCTTTTAAATGTATATTTTGTTCTAAATGTTCGAAGAGTTCCAGTGATTTAAAAAAACACATTAAAACTCACACTGTTGAAAAATCTTTCAGATGTGAAATTTGTTTAAAATGTTTCAAACAAAAAGGCAACTTAAAAGAGCATTATATTAGAACTCACATGGGCGAAAAGTCATTCAAATGTGAAATTTGCTCAAAATGTTTCCCACATCAAAGGGATTTAAAAACTCATATTAAAATTCACACCGACGAGAAACCTTTTAAATGTGAAATTTGTTTCAAAGGTTTCATACAATCCAGTCATTTAAAACTGCATATTCGAATGCACACTAACGAAAAGCCTTTTAAATGTGAAATTTGTTCAAAATGTTTTTTTGATTCAGGTCAATTAAAAAGTCATATTAAAACTCACATTGAAGAAAAACCTTTCAAATGTGAAATTTGTTCAAAATGTTTCACACGAAAAGGTGGCTTAAAAGAGCATAATATTAGAATTCACATCGGTGAAAAGCCATTCAAATGTGAAATTTGCTCAAAATGTTTCCCACAACAGAGGCAGTTAAAAAAGCATATTAAAACTCACAATGGCGAGAAACCTTTTAAATGTAATATTTGTTTAAAAGGTTTCAAACAATCCGATCATTTAAAAATGCATATTCGAATTCACACTAACGAAAAGCCTTTTAAATGTGACATTTGTTCAAAATGTTTCATACAATCCGGTCAATTAAAAAAGCATATTCGAATTCACTCTGATGAATCTGATAAGTTAAACAACCATATTAGAATTGACACTGTTGAAAAATCTTTCAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAAGATCATATGAAAACTCACACTGGGGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATATTTTAGAAGTTCTAGTCATTTAAAAAGGCATATTAAAATTCACACTAAGGAATCTAATAAGTTAAACAACCATATTACAATTGATACTGGGGAAAAATCTGTAAGATGTGAAATTTGTACGAAATGTTTTAAAACTTCCACTTATTTAAAAATGCATATTAAAACTCACACTGATGAAAAACCTTTCAGATGTGAAATTTGTTCAAAATGTTTTCTACAGTCTGGTAATTTAAAAAGGCATATAAGAAGTCACACTGGTGAAAAACCTTTCCAATGTGAAATTTGTTCAAAATGTTTCACACAAAAAGGTACCTTAAAAGAGCATATTAGAACTCACACTGACAAATGA
Protein Sequence
MEVFQDALNTLINNKIGNDSNDLLSHIKTEEPDTFEESNLELENLHQFDLCKIKTESYVEKVSPTKSDLLMNRENIKIENIDSNEGMEERKCDIEINTEITQLPFDFPVCRNDLVENRQKVQTINMYSRKKRFLSATKKWQTHFGKLNGTCYSCGKFFYDKVLFLNHFYIYHCLANCKKSVILGRNNSATKHAKVEDLRNLNEHMQTHTGQISTFYNQKIHSQTHFSENSLSCNICLKNFTKQSRLKKHMRSHSGDKPFKCEICSKSYKQSSHLKSHMITHTGEKPFRCEICLKCFPFQNKLKDHIKIHSDERPFKCIFCSKCSKSSSDLKKHIKTHTVEKSFRCEICLKCFKQKGNLKEHYIRTHMGEKSFKCEICSKCFPHQRDLKTHIKIHTDEKPFKCEICFKGFIQSSHLKLHIRMHTNEKPFKCEICSKCFFDSGQLKSHIKTHIEEKPFKCEICSKCFTRKGGLKEHNIRIHIGEKPFKCEICSKCFPQQRQLKKHIKTHNGEKPFKCNICLKGFKQSDHLKMHIRIHTNEKPFKCDICSKCFIQSGQLKKHIRIHSDESDKLNNHIRIDTVEKSFKCEICSKCFTQNGHLKDHMKTHTGEKPFRCEICSKYFRSSSHLKRHIKIHTKESNKLNNHITIDTGEKSVRCEICTKCFKTSTYLKMHIKTHTDEKPFRCEICSKCFLQSGNLKRHIRSHTGEKPFQCEICSKCFTQKGTLKEHIRTHTDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057397;
90% Identity
iTF_00057397;
80% Identity
iTF_00057397;