Avir013432.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000614:163459-180008[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.7 56 4.0 0.0 22 46 214 238 209 241 0.87 2 11 0.21 16 5.7 0.0 21 46 241 266 237 272 0.89 3 11 0.14 11 6.2 0.0 21 46 297 322 289 324 0.90 4 11 0.00039 0.031 14.4 0.0 21 46 325 350 321 356 0.86 5 11 0.02 1.6 8.9 0.0 22 51 354 383 349 385 0.85 6 11 2.3 1.8e+02 2.3 0.0 21 46 381 406 379 409 0.85 7 11 0.19 15 5.8 0.0 21 48 409 436 405 440 0.85 8 11 0.11 8.9 6.5 0.2 21 52 437 468 434 469 0.87 9 11 0.53 42 4.4 0.0 21 46 465 490 463 495 0.90 10 11 5.2 4.1e+02 1.2 0.1 24 48 496 520 492 525 0.81 11 11 0.12 9.3 6.4 0.0 26 45 526 545 522 550 0.90
Sequence Information
- Coding Sequence
- ATGGATGTTTACAAAGAAAAAATTAAAACCGGAGAAATGGAGATTCCACTTAAAATTGAGGACTGTTATCAAACCGACGGGAATCTTAACTTGAATATTAAAAAAGAACTTTTATACTCGGTTTGTGATTTGACCAATTTGAAAAAAGAGGCCGATGATGAATTATACTTAGAGAAAACGTCATTTAATTCCAGAGGTTTTTTATCTACTCGAAACAAATCAAAATATAATTTTGGAAAAGAATCACGGATTTGTTACTTTTGTGGAAAGTTTTTCAACCATAAACTACTGTTGGTACATCATTTCTGTGTGTACCATTTTTTACAACATACTACAAGAACTCTTGGAATGAAGAAGAATAGTGATATCAAGAAACTCAACAAAAAACATATTTTTCACAAGATTTGCTCAAAAATGTTCCAGCAAAATCGTTACTTAAAAACAGATATTAAAAAAAGAAAAACAACATTTCATTTCCATAAAAATTTTAAATACAAAAATAATCGGAATTACCATATGATTCATAAAAATGAAAAAACAGGTAGATCTTTAAAACATCATCAACGTGAAAAATCAGTTATATGTAATGTTCGTACAAAAATTTGCACAAGTAAAGGGAATTTAAAATTTGAAACTGGTAAAAAACCGTTTAAATGTGATATTTGTTCAAAAGTTTTCAGATACAAATCTGGTTTAAAAATTCATATTAGAATGCACACCGGTGAAAAACCGTTCAAATGTAGTATTTGTTCAAATCAATTCACAACTTTATATAATTTAAAACAACATCTAAAAATTCACACTGGTAAAAAGTCGTTTAAATGTGATATTTGTTCAAAACCTTTCACATATAAATCTGGGTTAAAAAGTCATTTTAGAATTCACACTGGTGAAAAACCGTTTAAATGTAATATTTGTTCAAAACTATTGACAACCTCATTTAGATTGAAACACCATCTAAGAATTCACACTGGCGAAACTCCGTTTAAATGTAATATTTGTTTAAAACTATTCACAACCTCATTTAATTTAAGACGACATTTAAAAAACCACAGTGGTAAAAAGCCGTTTAAATGTAATGTTTGTTCAAAACTATTCAGAACCTCATTTAATTTAAAAGAACATATGAGAATTCACACTGGAGAAAAACCGTTTAAATGTAATATTTGTTCAAATAATTTCACACACCAATCTTCTTTAAAAAGTCATCTTAGAATTCACACTGGTGAACAACCGTTTAAATGTGACATTTGTTCAAAACTTTTGACAACAGAAAGCACTTTAAAAAGTCATATAAAAATTCACACTGGAGAAAAACCGTTTAAATGTAATATTTGTTCAAATCCTTTCAGACACCAATCTTCTTTACAACAACATCTTAGAATTCACACTGGAGAAAAACCTTTTAAATGTAATATTTGTTCAAAACTATTCTCACTCTCGAGTTATTTAAAAAAACATATGAGAGTTCACAATGATGAAAAACGATTTAAATGTGGCGTTTGTTCAAAATGTTTCACACAATCAATACATTTACAAACACATATAAAAACTCACACTGGTGCAAAAACTTTTAATTGTAATATTTGTTTAAAATTTTTCACGCAATCAGGTAGTTTAAAAAGACATATGAAAACTCACACTATTGGTTTAAATCATTTAACGTGCCAACAATTTAAAATTTAA
- Protein Sequence
- MDVYKEKIKTGEMEIPLKIEDCYQTDGNLNLNIKKELLYSVCDLTNLKKEADDELYLEKTSFNSRGFLSTRNKSKYNFGKESRICYFCGKFFNHKLLLVHHFCVYHFLQHTTRTLGMKKNSDIKKLNKKHIFHKICSKMFQQNRYLKTDIKKRKTTFHFHKNFKYKNNRNYHMIHKNEKTGRSLKHHQREKSVICNVRTKICTSKGNLKFETGKKPFKCDICSKVFRYKSGLKIHIRMHTGEKPFKCSICSNQFTTLYNLKQHLKIHTGKKSFKCDICSKPFTYKSGLKSHFRIHTGEKPFKCNICSKLLTTSFRLKHHLRIHTGETPFKCNICLKLFTTSFNLRRHLKNHSGKKPFKCNVCSKLFRTSFNLKEHMRIHTGEKPFKCNICSNNFTHQSSLKSHLRIHTGEQPFKCDICSKLLTTESTLKSHIKIHTGEKPFKCNICSNPFRHQSSLQQHLRIHTGEKPFKCNICSKLFSLSSYLKKHMRVHNDEKRFKCGVCSKCFTQSIHLQTHIKTHTGAKTFNCNICLKFFTQSGSLKRHMKTHTIGLNHLTCQQFKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056935;
- 90% Identity
- iTF_00056935;
- 80% Identity
- iTF_00056935;