Avir013432.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000614:163459-180008[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.36 11 6.7 6.2 3 23 85 106 84 106 0.93
2 14 7.6 2.4e+02 2.5 0.1 5 17 135 147 133 148 0.88
3 14 1.2e-07 3.7e-06 27.1 1.1 1 23 217 239 217 239 0.99
4 14 2.9e-05 0.00089 19.6 2.2 1 23 245 267 245 267 0.98
5 14 3e-06 9.4e-05 22.6 1.7 1 23 273 295 273 295 0.98
6 14 0.0029 0.091 13.3 4.1 1 23 301 323 301 323 0.99
7 14 2e-05 0.00064 20.0 3.3 1 23 329 351 329 351 0.98
8 14 1.5e-06 4.5e-05 23.6 2.4 1 23 357 379 357 379 0.99
9 14 1.2e-05 0.00038 20.7 3.9 1 23 385 407 385 407 0.99
10 14 9.5e-05 0.003 17.9 0.8 1 23 413 435 413 435 0.99
11 14 4.6e-06 0.00014 22.1 2.8 1 23 441 463 441 463 0.99
12 14 1.6e-06 4.9e-05 23.5 2.4 1 23 469 491 469 491 0.99
13 14 5.9e-06 0.00019 21.7 5.7 1 23 497 519 497 519 0.99
14 14 9.4e-07 3e-05 24.2 2.6 1 23 525 547 525 547 0.98

Sequence Information

Coding Sequence
ATGGATGTTTACAAAGAAAAAATTAAAACCGGAGAAATGGAGATTCCACTTAAAATTGAGGACTGTTATCAAACCGACGGGAATCTTAACTTGAATATTAAAAAAGAACTTTTATACTCGGTTTGTGATTTGACCAATTTGAAAAAAGAGGCCGATGATGAATTATACTTAGAGAAAACGTCATTTAATTCCAGAGGTTTTTTATCTACTCGAAACAAATCAAAATATAATTTTGGAAAAGAATCACGGATTTGTTACTTTTGTGGAAAGTTTTTCAACCATAAACTACTGTTGGTACATCATTTCTGTGTGTACCATTTTTTACAACATACTACAAGAACTCTTGGAATGAAGAAGAATAGTGATATCAAGAAACTCAACAAAAAACATATTTTTCACAAGATTTGCTCAAAAATGTTCCAGCAAAATCGTTACTTAAAAACAGATATTAAAAAAAGAAAAACAACATTTCATTTCCATAAAAATTTTAAATACAAAAATAATCGGAATTACCATATGATTCATAAAAATGAAAAAACAGGTAGATCTTTAAAACATCATCAACGTGAAAAATCAGTTATATGTAATGTTCGTACAAAAATTTGCACAAGTAAAGGGAATTTAAAATTTGAAACTGGTAAAAAACCGTTTAAATGTGATATTTGTTCAAAAGTTTTCAGATACAAATCTGGTTTAAAAATTCATATTAGAATGCACACCGGTGAAAAACCGTTCAAATGTAGTATTTGTTCAAATCAATTCACAACTTTATATAATTTAAAACAACATCTAAAAATTCACACTGGTAAAAAGTCGTTTAAATGTGATATTTGTTCAAAACCTTTCACATATAAATCTGGGTTAAAAAGTCATTTTAGAATTCACACTGGTGAAAAACCGTTTAAATGTAATATTTGTTCAAAACTATTGACAACCTCATTTAGATTGAAACACCATCTAAGAATTCACACTGGCGAAACTCCGTTTAAATGTAATATTTGTTTAAAACTATTCACAACCTCATTTAATTTAAGACGACATTTAAAAAACCACAGTGGTAAAAAGCCGTTTAAATGTAATGTTTGTTCAAAACTATTCAGAACCTCATTTAATTTAAAAGAACATATGAGAATTCACACTGGAGAAAAACCGTTTAAATGTAATATTTGTTCAAATAATTTCACACACCAATCTTCTTTAAAAAGTCATCTTAGAATTCACACTGGTGAACAACCGTTTAAATGTGACATTTGTTCAAAACTTTTGACAACAGAAAGCACTTTAAAAAGTCATATAAAAATTCACACTGGAGAAAAACCGTTTAAATGTAATATTTGTTCAAATCCTTTCAGACACCAATCTTCTTTACAACAACATCTTAGAATTCACACTGGAGAAAAACCTTTTAAATGTAATATTTGTTCAAAACTATTCTCACTCTCGAGTTATTTAAAAAAACATATGAGAGTTCACAATGATGAAAAACGATTTAAATGTGGCGTTTGTTCAAAATGTTTCACACAATCAATACATTTACAAACACATATAAAAACTCACACTGGTGCAAAAACTTTTAATTGTAATATTTGTTTAAAATTTTTCACGCAATCAGGTAGTTTAAAAAGACATATGAAAACTCACACTATTGGTTTAAATCATTTAACGTGCCAACAATTTAAAATTTAA
Protein Sequence
MDVYKEKIKTGEMEIPLKIEDCYQTDGNLNLNIKKELLYSVCDLTNLKKEADDELYLEKTSFNSRGFLSTRNKSKYNFGKESRICYFCGKFFNHKLLLVHHFCVYHFLQHTTRTLGMKKNSDIKKLNKKHIFHKICSKMFQQNRYLKTDIKKRKTTFHFHKNFKYKNNRNYHMIHKNEKTGRSLKHHQREKSVICNVRTKICTSKGNLKFETGKKPFKCDICSKVFRYKSGLKIHIRMHTGEKPFKCSICSNQFTTLYNLKQHLKIHTGKKSFKCDICSKPFTYKSGLKSHFRIHTGEKPFKCNICSKLLTTSFRLKHHLRIHTGETPFKCNICLKLFTTSFNLRRHLKNHSGKKPFKCNVCSKLFRTSFNLKEHMRIHTGEKPFKCNICSNNFTHQSSLKSHLRIHTGEQPFKCDICSKLLTTESTLKSHIKIHTGEKPFKCNICSNPFRHQSSLQQHLRIHTGEKPFKCNICSKLFSLSSYLKKHMRVHNDEKRFKCGVCSKCFTQSIHLQTHIKTHTGAKTFNCNICLKFFTQSGSLKRHMKTHTIGLNHLTCQQFKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057392;
90% Identity
iTF_00057392;
80% Identity
iTF_00057392;