Avir015594.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000785:39948-43537[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4 1.1e+02 3.0 0.3 23 48 141 166 137 170 0.87 2 12 0.17 14 5.9 0.0 21 44 196 219 188 222 0.91 3 12 0.091 7.2 6.8 0.2 21 44 224 247 220 251 0.92 4 12 0.011 0.86 9.8 0.0 21 44 252 275 247 279 0.89 5 12 0.018 1.4 9.1 0.2 21 46 280 305 276 311 0.86 6 12 2.5 2e+02 2.2 0.0 21 45 308 332 304 339 0.84 7 12 0.51 40 4.4 0.0 21 45 336 360 332 363 0.90 8 12 0.0052 0.41 10.8 0.4 21 46 364 389 360 392 0.91 9 12 0.0045 0.35 11.0 0.1 21 48 406 433 403 437 0.87 10 12 0.13 11 6.3 0.1 21 45 434 458 430 465 0.87 11 12 0.0078 0.62 10.2 0.1 21 46 462 487 458 493 0.86 12 12 1.1 91 3.3 0.0 21 44 490 513 486 516 0.89
Sequence Information
- Coding Sequence
- ATGGAAATTAAGACAGACATTACAAACCGTCCATTTGATATCCCTGTTAGTAGAAATGATATCCATAATTTTGATGAAAATCCACAGACAGTGCAAACAATTAAAATGTATTCTTGGGAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTATGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTGTAAAAAATCTGTTAATTTGAGAACGAGTAATTATGCTACAAAACGTATTAACCTAAAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTTACAGTAGACAAAACAGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAATTCACACTGGTAAAAAACCTTTCAGATGTAAAATTTGTTCAAAATGTTTCAGACGAAAAGCTAGCTTAAAAGATCATATTAATCGAATTCATACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAAGATCATATTAAAACTCACACTGATGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATATTCCAGTAATTTAAAAGTTCATATTAGAACTCACATTAGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTTTTACACTCTGGTAGTTTAAAAAGGCATACAAGAACTCACACTGGTGAAAAACCTTTCACATGTGAAATTTGTTCGAAATGTTTCACAGATTCCAGCAATTTAAATAGTCATATGAGAACTCACACTGGTGAAAAACCGTTTAGATGTCAAATTTGTTCAAAATGTTTCACACAATCCACTAGTTTAAAAAAACATATGAGAACTCACACTGGTGAAAAACCTTTCAGATGTAAAATTTGTTCGAAATGTTTCACACTGTCCGATCATTTAAAATGGCATATTAAAAATCACACTGGTGAAAAACCTTTCAAATGTAAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAACATCATATTAAAACTCACACTGGTGAAAACCCTTTTAGATGTGAAATTTGTACAAAATGTTTTAGAAGTTCCAGTCATTTAAAAAGGCATATTAAAATTCACACTAAGGAATCTGATAAGTTAAACAACCATATTAAAATTGGTACTGGTGAAAAACCTTTCAGATGTCAAATTTGTTCAAAAAGTTTTATACAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCGAAATGTTTCACAGATTCCAGTAATTTAAATAGCCATATTAGAACTCACACTGGTGAAAAACCGTTTAGATGTCAAATTTGTTCAAAAAGTTTTATACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAAAGTTTTACCCGTGACGGTAGCTTAAAACGGCATATTAATAGTTGTGACGGCAAAACGTCCTAA
- Protein Sequence
- MEIKTDITNRPFDIPVSRNDIHNFDENPQTVQTIKMYSWEKRFLSAAKKWHPQFGKYYGSCSFCGQFFCDKLLFLNHFYIYHILVNCKKSVNLRTSNYATKRINLKDFGNLKEQMRTYSRQNSFKRQKDLKQHIKIHTGKKPFRCKICSKCFRRKASLKDHINRIHTGEKSFKCEICSKCFTQNGHLKDHIKTHTDEKPFKCKICSKCFTYSSNLKVHIRTHISEKPYKCEICSKCFLHSGSLKRHTRTHTGEKPFTCEICSKCFTDSSNLNSHMRTHTGEKPFRCQICSKCFTQSTSLKKHMRTHTGEKPFRCKICSKCFTLSDHLKWHIKNHTGEKPFKCKICSKCFTQNGHLKHHIKTHTGENPFRCEICTKCFRSSSHLKRHIKIHTKESDKLNNHIKIGTGEKPFRCQICSKSFIQSSDLKRHIRIHTGEKPFRCEICSKCFTDSSNLNSHIRTHTGEKPFRCQICSKSFIQSSDLKRHIRTHTGEKPFRCEICSKSFTRDGSLKRHINSCDGKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00056810;
- 90% Identity
- iTF_00056810;
- 80% Identity
- iTF_00056810;