Avir015594.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Altica viridicyanea
Gene Symbol
-
Assembly
None
Location
GWHAMMQ00000785:39948-43537[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.38 12 6.6 3.0 2 23 60 82 60 82 0.90
2 15 0.024 0.76 10.3 0.4 9 23 123 137 121 137 0.95
3 15 1.4e-06 4.4e-05 23.7 4.1 1 23 143 166 143 166 0.98
4 15 7.8e-07 2.4e-05 24.5 5.7 1 23 172 194 172 194 0.99
5 15 6.8e-08 2.1e-06 27.8 5.4 1 23 200 222 200 222 0.99
6 15 0.00012 0.0039 17.6 6.6 1 23 228 250 228 250 0.99
7 15 1.4e-08 4.4e-07 30.0 3.8 1 23 256 278 256 278 0.99
8 15 2.6e-07 8.1e-06 26.0 6.5 1 23 284 306 284 306 0.99
9 15 1.8e-05 0.00058 20.2 6.2 1 23 312 334 312 334 0.98
10 15 3.5e-06 0.00011 22.5 9.7 1 23 340 362 340 362 0.99
11 15 3.9e-07 1.2e-05 25.4 6.8 1 23 368 390 368 390 0.98
12 15 2.8e-08 8.6e-07 29.1 1.2 1 23 410 432 410 432 0.99
13 15 2.5e-08 7.8e-07 29.2 3.5 1 23 438 460 438 460 0.99
14 15 1.6e-08 5e-07 29.8 1.9 1 23 466 488 466 488 0.99
15 15 4.3e-06 0.00013 22.2 0.5 1 21 494 514 494 515 0.95

Sequence Information

Coding Sequence
ATGGAAATTAAGACAGACATTACAAACCGTCCATTTGATATCCCTGTTAGTAGAAATGATATCCATAATTTTGATGAAAATCCACAGACAGTGCAAACAATTAAAATGTATTCTTGGGAAAAACGTTTCCTATCTGCGGCAAAAAAATGGCATCCTCAATTTGGAAAATACTATGGAAGCTGTTCCTTTTGTGGACAATTTTTCTGTGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACATTTTAGTTAATTGTAAAAAATCTGTTAATTTGAGAACGAGTAATTATGCTACAAAACGTATTAACCTAAAAGATTTTGGTAATTTAAAAGAACAGATGAGGACTTACAGTAGACAAAACAGTTTTAAACGACAAAAAGACTTAAAACAGCATATTAAAATTCACACTGGTAAAAAACCTTTCAGATGTAAAATTTGTTCAAAATGTTTCAGACGAAAAGCTAGCTTAAAAGATCATATTAATCGAATTCATACTGGTGAAAAGTCATTCAAATGTGAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAAGATCATATTAAAACTCACACTGATGAAAAACCTTTTAAATGTAAAATTTGTTCAAAATGTTTCACATATTCCAGTAATTTAAAAGTTCATATTAGAACTCACATTAGTGAAAAACCTTACAAATGTGAAATTTGTTCAAAATGTTTTTTACACTCTGGTAGTTTAAAAAGGCATACAAGAACTCACACTGGTGAAAAACCTTTCACATGTGAAATTTGTTCGAAATGTTTCACAGATTCCAGCAATTTAAATAGTCATATGAGAACTCACACTGGTGAAAAACCGTTTAGATGTCAAATTTGTTCAAAATGTTTCACACAATCCACTAGTTTAAAAAAACATATGAGAACTCACACTGGTGAAAAACCTTTCAGATGTAAAATTTGTTCGAAATGTTTCACACTGTCCGATCATTTAAAATGGCATATTAAAAATCACACTGGTGAAAAACCTTTCAAATGTAAAATTTGTTCAAAATGTTTCACACAAAACGGACATTTAAAACATCATATTAAAACTCACACTGGTGAAAACCCTTTTAGATGTGAAATTTGTACAAAATGTTTTAGAAGTTCCAGTCATTTAAAAAGGCATATTAAAATTCACACTAAGGAATCTGATAAGTTAAACAACCATATTAAAATTGGTACTGGTGAAAAACCTTTCAGATGTCAAATTTGTTCAAAAAGTTTTATACAATCCAGTGATTTAAAAAGGCATATTAGAATTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCGAAATGTTTCACAGATTCCAGTAATTTAAATAGCCATATTAGAACTCACACTGGTGAAAAACCGTTTAGATGTCAAATTTGTTCAAAAAGTTTTATACAATCCAGTGATTTAAAAAGGCATATTAGAACTCACACAGGTGAAAAACCTTTCAGATGTGAAATTTGTTCAAAAAGTTTTACCCGTGACGGTAGCTTAAAACGGCATATTAATAGTTGTGACGGCAAAACGTCCTAA
Protein Sequence
MEIKTDITNRPFDIPVSRNDIHNFDENPQTVQTIKMYSWEKRFLSAAKKWHPQFGKYYGSCSFCGQFFCDKLLFLNHFYIYHILVNCKKSVNLRTSNYATKRINLKDFGNLKEQMRTYSRQNSFKRQKDLKQHIKIHTGKKPFRCKICSKCFRRKASLKDHINRIHTGEKSFKCEICSKCFTQNGHLKDHIKTHTDEKPFKCKICSKCFTYSSNLKVHIRTHISEKPYKCEICSKCFLHSGSLKRHTRTHTGEKPFTCEICSKCFTDSSNLNSHMRTHTGEKPFRCQICSKCFTQSTSLKKHMRTHTGEKPFRCKICSKCFTLSDHLKWHIKNHTGEKPFKCKICSKCFTQNGHLKHHIKTHTGENPFRCEICTKCFRSSSHLKRHIKIHTKESDKLNNHIKIGTGEKPFRCQICSKSFIQSSDLKRHIRIHTGEKPFRCEICSKCFTDSSNLNSHIRTHTGEKPFRCQICSKSFIQSSDLKRHIRTHTGEKPFRCEICSKSFTRDGSLKRHINSCDGKTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00057387;
90% Identity
iTF_00057387;
80% Identity
iTF_00057387;