Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00001795:111155-115156[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.19 15 5.8 0.0 21 45 219 243 212 250 0.87

2 13 0.067 5.3 7.2 0.1 21 44 247 270 243 274 0.90

3 13 0.067 5.3 7.2 0.2 21 45 275 299 271 306 0.86

4 13 0.0067 0.53 10.4 0.1 21 45 303 327 298 333 0.90

5 13 3.5 2.8e+02 1.7 0.0 22 46 360 384 355 391 0.84

6 13 3.9 3.1e+02 1.6 0.0 22 45 388 411 377 414 0.84

7 13 0.063 5 7.3 0.1 21 44 415 438 407 442 0.90

8 13 0.16 13 6.0 0.1 21 44 443 466 439 470 0.90

9 13 0.063 5 7.3 0.0 21 44 471 494 467 498 0.90

10 13 0.00039 0.031 14.4 0.1 21 47 499 525 495 531 0.85

11 13 1.8 1.4e+02 2.6 0.2 21 46 527 552 523 559 0.85

12 13 0.045 3.6 7.8 0.0 21 45 583 607 574 613 0.88

13 13 3 2.4e+02 1.9 0.2 25 44 615 634 607 639 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.19	15	5.8	0.0	21	45	219	243	212	250	0.87
2	13	0.067	5.3	7.2	0.1	21	44	247	270	243	274	0.90
3	13	0.067	5.3	7.2	0.2	21	45	275	299	271	306	0.86
4	13	0.0067	0.53	10.4	0.1	21	45	303	327	298	333	0.90
5	13	3.5	2.8e+02	1.7	0.0	22	46	360	384	355	391	0.84
6	13	3.9	3.1e+02	1.6	0.0	22	45	388	411	377	414	0.84
7	13	0.063	5	7.3	0.1	21	44	415	438	407	442	0.90
8	13	0.16	13	6.0	0.1	21	44	443	466	439	470	0.90
9	13	0.063	5	7.3	0.0	21	44	471	494	467	498	0.90
10	13	0.00039	0.031	14.4	0.1	21	47	499	525	495	531	0.85
11	13	1.8	1.4e+02	2.6	0.2	21	46	527	552	523	559	0.85
12	13	0.045	3.6	7.8	0.0	21	45	583	607	574	613	0.88
13	13	3	2.4e+02	1.9	0.2	25	44	615	634	607	639	0.85

Sequence Information

Coding Sequence: ATGGATATTTCTGTCATTAAACAAGAAGAAATAGAAATTGTTGATGAACCAAAACCCGAATTGCATGGTTTCGATCAGATGGAAATTATTCAAGAAGAGCCCTATATAAATAGTATGTTTAAAAAAGAACCGAAATTCCAATACGAAAACTCGCAACAATTCGTAACAGTTGATAATTCTACTAAAAGTGAAATAGATATTTCAGGTCAAACTACTCTTGACATAAATCATGAATTTGAGTGTAAAAAAGAACTATTGCACTCTATTTGCGATTTACCGGACTTTAAAATGGAATTTCAAGATTTTGATAAAGAATTAAATTCAGAGCGACGCATAAAAAGATATTCCAGGAAAAAGGATCCAAGTTGTAATAAGCGTTTTCTATCAGCGGCAAAAAAATGGCAACCTCACTTTGGAAAATTCTATGGAACATGCTCATCTTGTGGAAAATTCTTCTATGATAAATTGCTATTTTTAAACCATTTTTATATTTACCACTTTTCCGTTAATTCGAAAAAATCTGTGAACTTAAAAAGGAATAATTCTGGCACAAAGCATATTAACCGACAAGATCTTAGTAATTTAAACAAACAGATAAGGGCGCACAGTTTCACACAACAAAGTGATTTTAAAAAATATATTAAAACCCATAATGGCGAGAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAAAATCCACTAATTTAAAAAGTCATGTTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAATTTTGTTCGAAATGTTTCACACAATCCAGTAACTTAAAAACTCATATTAGAACTCACACTAACGAAAACCCTTTTAAATGTAAAATTTGTTTGCAATGTTTTACACAATCCAGTCAGTTAAAAGTTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAAAGACATATTAGAACTCACACTAACGAAAAACTTTTTAAATGTAAGTTTTGTTCAAAATGTTTCACAGAATCCAGTATATTAAATAGACATATTAGAACTCACACTGGCAAAAAACCTTTTAAATGTCAAATTTGTTCGAAATGTTTCACAGATTCCAGTGGATTAAAAAGTCATATTAGAACTCACACTGACGACAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATTCGGTCATTTAAAATCTCATATTAGAATTCACACTGGCGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGATTCCAGTAATTTAAAAAATCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAGTTTTGTTCAAAATGTTTCACACAATCCAGTACATTAAATAGACATATTAGAACTCACACTGACGAAAAACCTTTTAAATGTAAAATTTGTTCCAAATGTTTCACAGATTCCAGTAATTTAAAAAATCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATATGTTCGAAATGTTTCACACAATCCGGTAATTTAAAAAGACATATTAGAACTCACACTAACGAGAAACCTTTTAAATGTAAGTTTTGTTCAAAATGTTTCACAGAATCCAGTATATTAAATAGACATATTAGAACTCACACTGGCAAAAAACCTTTTAAAGGTAGAATTTTTTCGAAATGTTTCTCAGATTCCAGTGGATTAAAAAGTCATATTAGAACTCACACTGACGAGAAACCTTTTAAATGTAAAATTTGTTCGAAATGTTTCACAGATTCCAGTAATTTAAAAAATCATATTAGAACTCACACTGACGAGAAACTTTTTAAATGTAAGTTTTGTTCAAAATGTTTCACACAATCCAGTACATTAAATAGGCATATTAGAACTCACACTGACGAAAAGCTTTTTAAATATAAAATTTGA
Protein Sequence: MDISVIKQEEIEIVDEPKPELHGFDQMEIIQEEPYINSMFKKEPKFQYENSQQFVTVDNSTKSEIDISGQTTLDINHEFECKKELLHSICDLPDFKMEFQDFDKELNSERRIKRYSRKKDPSCNKRFLSAAKKWQPHFGKFYGTCSSCGKFFYDKLLFLNHFYIYHFSVNSKKSVNLKRNNSGTKHINRQDLSNLNKQIRAHSFTQQSDFKKYIKTHNGEKPFKCKLCSKCFTKSTNLKSHVRTHTDEKPFKCKFCSKCFTQSSNLKTHIRTHTNENPFKCKICLQCFTQSSQLKVHIRTHTDEKPFKCKICSKCFTESGNLKRHIRTHTNEKLFKCKFCSKCFTESSILNRHIRTHTGKKPFKCQICSKCFTDSSGLKSHIRTHTDDKPFKCKICSKCFTQFGHLKSHIRIHTGEKPFKCKICSKCFTDSSNLKNHIRTHTDEKPFKCKFCSKCFTQSSTLNRHIRTHTDEKPFKCKICSKCFTDSSNLKNHIRTHTDEKPFKCKICSKCFTQSGNLKRHIRTHTNEKPFKCKFCSKCFTESSILNRHIRTHTGKKPFKGRIFSKCFSDSSGLKSHIRTHTDEKPFKCKICSKCFTDSSNLKNHIRTHTDEKLFKCKFCSKCFTQSSTLNRHIRTHTDEKLFKYKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00056808; iTF_00056781;
90% Identity: iTF_00056808; iTF_00056781;
80% Identity: iTF_00056808; iTF_00056781;