Avir005828.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00002077:14931-21534[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.2 6.5e+02 0.6 0.0 26 46 89 109 75 115 0.79 2 11 0.03 2.4 8.4 0.0 21 45 112 136 108 142 0.91 3 11 0.5 39 4.4 0.0 23 46 142 165 138 172 0.85 4 11 1 82 3.4 0.1 22 44 169 191 166 196 0.86 5 11 0.055 4.3 7.5 0.0 21 45 196 220 191 223 0.90 6 11 0.012 0.96 9.6 0.1 21 49 224 252 220 256 0.86 7 11 2.9 2.3e+02 2.0 0.0 21 47 252 278 249 283 0.84 8 11 0.21 17 5.6 0.0 20 44 279 303 269 307 0.85 9 11 0.54 42 4.3 0.0 21 44 308 331 304 335 0.89 10 11 0.0052 0.41 10.8 0.0 21 45 336 360 332 363 0.90 11 11 0.0032 0.25 11.5 0.0 21 44 364 387 360 390 0.91
Sequence Information
- Coding Sequence
- ATGGATGATATTTCTACAATAAAAGAAGAAAAAATCGAAATTATTGACGAATCAAAACCAGAATTCGACAATTTTGATCAGATGGAAAAAATTGAAGAACATGAGGTGAATATTGAATTTGAAATTAAAAAAGAAGAATTACACTCTACAATAGATTTACCGGATTTTAAAATCGAATTTCAAGATTCTGATGAAGAATTAAATTCAGAACGAGATTCAACAAAACAGGAACCGAGTTATAAAAATATTGCCGATAAATTTTTTAAATGTAAATTATGTTCGAAATGTTTTGCACACTCGGGTAGTTTAAATAGGCATATTAAAACTCACACTGGGGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATATTTCACAGAATCCGGTAATTTAAAAAAGCACATTAAAACTCACACAGGAGAAAAACGTTTTAAATGTGAAATTTGTTCGAAATGTTTCACACAATCTAGTAGTTTAAAATCGCATGTTAAAATTCACACTGGCGAGAAAGGTTTTAAATGTGAAATTTGTTCACAATGTTTTTCACACTCTGGTAGTTTAAAAAGACATATTAGAACTCACACTAACGAAAAACCTTTTAAATGTAAGATTTGTTCGAAATGTTTCACAGAATCCGGTAATTTAAAAGATCATATTAAAACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACACAATCCTGTAATTTAAAAAGTCATATTAAAACTCACACAAACGAGAAACCTTTTAAATGTGAATTTTGTTCGAAATATTTCATAGACTCCAGTACTTTAAAAAAGCATATTAGAACTCACACTAACGAGAAACCTTTTAATTGTAAATTATGTTCGAAATCTTTCACACAATCCAGTAGTTTAAAATCTCATATTAGCACTCACACTGGAGAAAAACCTTTTAAATGTAAATTATGTTCGAAATGTTTCACAGAATCCGGTAGTTTAAATAGACATATTAGAACTCACACTAACGAGAAACCATTTAAATGTAATATTTGTTCGAAATATTTCACACAATCTGGTAATTTAAAAAATCATATTAAAACTCACACGAACGAAAAACCTTTTAAATGTGAAATTTGTTCGAAATATTTTAAACAATCCCGTAGTTTAAAAATTCATATAAAAAATCACTAA
- Protein Sequence
- MDDISTIKEEKIEIIDESKPEFDNFDQMEKIEEHEVNIEFEIKKEELHSTIDLPDFKIEFQDSDEELNSERDSTKQEPSYKNIADKFFKCKLCSKCFAHSGSLNRHIKTHTGEKPFKCEICSKYFTESGNLKKHIKTHTGEKRFKCEICSKCFTQSSSLKSHVKIHTGEKGFKCEICSQCFSHSGSLKRHIRTHTNEKPFKCKICSKCFTESGNLKDHIKTHTGEKPFKCKLCSKCFTQSCNLKSHIKTHTNEKPFKCEFCSKYFIDSSTLKKHIRTHTNEKPFNCKLCSKSFTQSSSLKSHISTHTGEKPFKCKLCSKCFTESGSLNRHIRTHTNEKPFKCNICSKYFTQSGNLKNHIKTHTNEKPFKCEICSKYFKQSRSLKIHIKNH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057429;
- 90% Identity
- iTF_00056889;
- 80% Identity
- iTF_00056889;