Avir010174.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- retn
- Assembly
- None
- Location
- GWHAMMQ00000040:1093854-1104077[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-21 2.1e-17 63.2 0.0 7 89 20 100 17 100 0.93 2 2 0.46 1.2e+03 -0.0 0.0 24 40 235 253 196 256 0.68
Sequence Information
- Coding Sequence
- ATGTCTCTGGACAAGTGGCATATCTTAACATTCAAGGTTAGATTAGCTTTCTCGTTTGATGATTTATTTAAATCTAGTCGTGCTCTTGGAACACCTATAAATAGACTCCCAATAATGGCAAAGTCGGTACTTGATCTCTATGAATTATATAATTTGGTGATAGCCAGGGGCGGGTTAGTAGATGTAATAAATAAGAAGTTATGGCAAGAAATAATAAAAGGTCTTCATCTACCCTCATCTATCACATCAGCAGCATTTACACTTAGAACACAATACATGAAATACCTCTATCCATACGAATGTGAGAAACGACGACTAAGCACTCCTGCAGAACTCCAAGCAGCAATTGACGGCAATCGAAGGGAAGGAAGGAGAAGTAGTTACGGACAATACGATTCAATGCAAAGATCACCAAATCCTACTCTCCAAATGTCACCTCTATCCTTAGTTTCTCAGCAACAACAACAACAACTCGCTGCCAGAATGATGGGGGGAGGTATCAATTTACACAATGGGGCACATCATCCTAGTCATCCACAACCAATGGGACAACCAATTAATGGAGGTCCATTACCAGGATTAGCACCAAGTGAGTTCGAAGCTCGTATGATGGAGTACGTAAAGCTTCTGAACAAAGAAATACGTAGTTCAGCAGCTACACCACCACGTCAAGGTGATATTTCTCCCCCAAATACAACTTCCCCTCTTAACCAACTCGAAATGTCTCGAATGAACCTCTGGAACCTTTGGAATACTGCTCAACCTGCGGTAGAACCACAGAAAGAACCAATAAATTTATCAGAACCCTCTTCAGGACTGATGAAACGAGAACCAGAGTGTAGAGATTCACCTCCTCCACCGAAAAGGATTAGTAAGGAAGAAGAAAATGAACCTGTTCCAAAATCTTTATCACCTTCAACACATATAAAAATTAACAGTAGAGGTGATTCTCGAAATGGTGATAATTCATTGGTAGTCAGTATGGAACTGAATGGAGTGACATACCAGGGAGTTCTGTTTGCCCAAAATACACCGAATGGAAGCAGGACGGCACTGGCGTCTTAA
- Protein Sequence
- MSLDKWHILTFKVRLAFSFDDLFKSSRALGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGQYDSMQRSPNPTLQMSPLSLVSQQQQQQLAARMMGGGINLHNGAHHPSHPQPMGQPINGGPLPGLAPSEFEARMMEYVKLLNKEIRSSAATPPRQGDISPPNTTSPLNQLEMSRMNLWNLWNTAQPAVEPQKEPINLSEPSSGLMKREPECRDSPPPPKRISKEEENEPVPKSLSPSTHIKINSRGDSRNGDNSLVVSMELNGVTYQGVLFAQNTPNGSRTALAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00755230;
- 90% Identity
- iTF_00791865;
- 80% Identity
- -