Apic026106.1
Basic Information
- Insect
- Alloplasta piceator
- Gene Symbol
- -
- Assembly
- GCA_946863875.1
- Location
- OX333080.1:2025907-2031970[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-12 1.7e-09 38.0 0.0 1 39 273 312 273 316 0.90 2 4 4.7e-12 5.1e-09 36.4 0.1 2 39 328 365 327 368 0.94 3 4 1.7e-18 1.9e-15 57.0 0.0 2 45 383 427 382 427 0.97 4 4 2e-18 2.2e-15 56.8 0.0 1 42 434 476 434 477 0.97
Sequence Information
- Coding Sequence
- ATGTCGTTGCTGAAAACGGCCGATCAGCTGAAAATCAAGGGCCTCTGCGAGGTCCCGGAGAGCAGGGAAGGACCGCCGTCGGTGAGCCTCAGCTCACCACCGCCCCGTGACTCAACGTCGACGAGGTTGAACTACACAAAATTGAAGAGGCATCATCCCCGTTACAAGAGGCAAAGAACCTTCGAGCCACGTGCTACGAGTACGGATCCGCGAAATTTCGACAAGTACAAGGAGGAAGAGCGAAAAATCGAAGGCCTCGGCCGTGACAACAACAAAGAGAATCACCGAGGCGATTGGCCGACGGAGGATGAGGAGTGCGGAGCGGATGCACCGTCAGTAGTCCTGGAATCCTGCCAGCGCGACAGCAACAACGGTAACGGTACAAACAACAATAACGGTGACATGTTCTGTCACACAGGTCTGGGTCATTACGGTCATCATCCGGATCCTGGTGAGGTAGATTTACCGCCTGAGACACAGCCCACGCCACCGAGCGCCACCCTCGTCGGTACGACGATAACGCATCTCCGTGACACCGATCATCACTCTACAGACATACAAAACTGCGACAGCGTTAAAGTAAAATTTGAAACACTTCACACGATGGATTCGTCGGACACGATAGACATTGACAGTCACATGTCCGATCGTGCGAGCGTGAGCTCGAAAAATGCCGCCGACAATGACAATATGATGATGATAACGCCGGAATTGTTGGGCCTCATGCCCTCCGGCAGCTCCGTGCACTCGGACTCGGGCGAAAATAACTCTCGAGGCGCCGGCTCGGGCTCGCATCATCATGGATCAAAATCGTGGACCCAGGAGGACATGGACGCCGCACTCGAGGCACTGAGAAATCACGATATGAGCCTCACGAAAGCCTCAGCAACCTTCGGCATACCCTCGACGACATTGTGGCAACGTGCTCACAGGCTCGGTATCGATACACCGAAGAAAGACGGTCCAACGAAATCATGGAGCGACGAGAGTTTGAACAATGCCCTCGAGGCTCTTAGAACGGGCACGATATCGGCGAACAAAGCGTCAAAGGCATTTGGCATACCGTCCAGTACGCTTTACAAGATAGCGAGACGCGAGGGAATTAGGCTAGCGGCGCCGTTCAACGCGAGTCCGACAACTTGGTCACCGGCGGATCTTGACAGAGCCCTCGAGGCGATAAGATCGGGCCAGACATCGGTGCAACGTGCATCGACGGAATTCGGTATACCAACGGGAACGCTTTACGGTAGATGCAAGAGAGAGGGAATTGAATTGAGCCGTAGCAATCCGACACCGTGGAGCGAGGACGCGATGACAGAGGCGCTCGAGGCTGTcagATTGGGTCACATGAGCATCAATCAGGCAGCGATACATTACAATCTGCCGTACTCCTCGCTATACGGACGCTTCAAGAGGGGCAAATACGAGGATCCGGTCGTGATCGAGATGTCACAAGACGGCAGCAGTCCGCACTTTCATTCTCATCAGAGTCCCCATCAGAATCACTCGTCTTCGCTTCCCGATCAAATGCCTTATCAGGGTAGCTGA
- Protein Sequence
- MSLLKTADQLKIKGLCEVPESREGPPSVSLSSPPPRDSTSTRLNYTKLKRHHPRYKRQRTFEPRATSTDPRNFDKYKEEERKIEGLGRDNNKENHRGDWPTEDEECGADAPSVVLESCQRDSNNGNGTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDTDHHSTDIQNCDSVKVKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADNDNMMMITPELLGLMPSGSSVHSDSGENNSRGAGSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEDPVVIEMSQDGSSPHFHSHQSPHQNHSSSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01560354;
- 80% Identity
- -