Abil003444.1
Basic Information
- Insect
- Aleochara bilineata
- Gene Symbol
- Arid2
- Assembly
- GCA_003054995.1
- Location
- NBZA01001143.1:7681-18394[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.78 4.4e+03 -1.7 0.0 15 36 84 105 81 109 0.82 2 2 9.5e-14 5.4e-10 39.7 0.0 2 55 639 693 638 697 0.95
Sequence Information
- Coding Sequence
- ATGCGGCTGCAGTTGGCGAGTGAGCAACTGAGGAGCACAACGGCAGCCGCCTCGGTCATGGTGACGGCAACGTAtacgacgacggcggcggcagctcTGACTCCGTTTCGTCAACTGCCCAAGCTGAATGGGCGCGAGGTGGACCTGCATATGCTGTACACCCTCGTCAGCGAGCAAGGCGGATGGATGAAGGTGAATTCTAAGAATTCTTGGTCTGATTTCTTCGAGCCTCTGGAAGTCCCGGATAACTGCGTGAATGCAAGTGTAGCCCTGAAGCAAATTTATCTCAGGTACCTGGCGCGATGGGAGAAAGTCCATCTTGGCGACGAGGCCGATCGAGGgagcgacgacgacgaggagaACCGCCATAAACGGGGTGCATCTGCGCGCAATATGCACGCAGTATCTTCAATTTACAATTACCACCAGCACAATATTGCAGATGCAACCAGGGAGTTCAACAATCTGTCCACTGATTTGTACAAACCTTCGGATTATGATCGCTTAGGCCTTTCGCTGCTCTCGCCTCTTCCCAACGAGCAGGATTTTGCGATTAACGTCTGCACGCTACTCTCGAATGACGGCAAGCACACACTTAAACTGGAGAAACATCCCATTCTCTTAGACTATCTCCTTGCGCATGCCGGTGTGTTCAATCATGGCTCTCTAAGAAATGTCCTATCGTATAGCTACGTATGTATTCGGAAACAGAACATTAACACCTTCTGGAAGGAAGCGCTTGATTCCGAGGAGTTTCTGGATCTCACCAATGAAAATTTGTACATAAATGATGTGAAAAACACAGATGTGGTGCCCATTGTTGATCTCTCAAAGGAATTGGCGAAGGAAGACTGTCCGGTAACGCTCCTAACTCAGATTGACGATGATGAGTTGTTCGCCAGCGAAGTGAGTGCAGTGGAAACTATTTCTTCGCGGTCCAAGTCGAAATTTGACTTCGACCCCACAGACAAAGAACTTTTTAATCTAGGCCGAAATCTTGGCACACGGGATTACATGGGTCAGCGTGTTCTGCAAATCGCGACAATTCTTCGTAATTTGAGTTTCTTCGATGAGAACGTGTCCGTGTTGGTGCGTAATAGAACGTTTGTGCGATTTACGTTGCTGTGCGCGTGTTCAAAGTGGAACCAATTAATGAATCTTGGTTTGGAGATGCTTGGCAATCTCTCGGGCGAATTTCTTGTGAGGGACTTGGAACGGGACAAGATATCCAAGAGTATGATTAAGATTGTCACGCGAGGGTTGCAAATGGAGGATCGCAATTGGTGCATTACTGCGCTGGAAGTGCTGAACAAGTTGAGCCAGAATGAAGCCAATGAAGATATATTGCTGCGGTGCCTTGAACTGAGTGTGTACGAGCGCGTATGTTCATTCCTCACCATTCACGACGTGATGCTGTTGATCTATACGCTGGAGTGTCTTTATTCGTTATCGTCCTTAGGCGAGCGCGCCTGTAActatattgtaaatatatatgGCGCGGTGGATACTTTGGTGTCTCTGGTTACCGTCGAGGGTAAGAGCTACGGGCCAAAGGCTTGCATCGGTATGAAGCTGGTCGAGACAGTGACGGGCACTGCACCCGCTCAGCAACAGTCTGCGAGTAACTCgagcagcgtcgcgacgccaagTACGACGACCGTCAGCGTGTCCTCGACGAGTATCGCGTCGCCCAGTGCGCCGACTGCGGTTTTGGTTCAATCGCTCGTTCCGGTGAAAACAAGCGCGCCTTCAACCCCCATGCGACAAGTTGCTATCGCGCCGCAAAGACTTATCACTTCATCGCCATCACCAGCATCAACGGCAACATCAACAACCCCATCTGTTGCACAACCTATTGCCTCGCAGCAGTTGCAGCAGAAGCATGCTCATCAGCAGAGTATTCAGGAGAATGAACAATTCGCTCTGACATGGTTGCGAGCAACTTATGAATTAGCTTCTAATTGTAAAGTCGATCATCAGGAATTATACAAACACTACATTAACTCATGCGCAAAAATTGGGCGACGTGGTGTTATCGCTCCAAACCATTTTCCACGATGTGTCAGgTCGGTGTTCGGGGGAACCGTTGGACCAAATCCAGAAAAACCTGGGACGACGAATACACCTCAGTTTTACGAAGGCATTAAGGTGCGAGCACAACCACTGGTTATAAATGTTCAATCAACAACCACCCAAGTCACACCTACAATTACGTCCGCAAAGGGCGTCGTTGTGCGTCGAAAGCTCCCGTCCACAAATCCTATTACCCTGTCGCCTGACGCGTCCGCAGACCCGCCACCGGCTTCTCCAGCTTCCCCTATTCTGAAAGCACAGCTGAGTGCGCCTCCTAAACCCCGCGAGGCCGCGCCGGCCACCACTATAGCTGACGGTGCAAAGAGTCAGGTGATGGCGCATCCACATTTAAGTCAAGCGCTTTTGGGCAGTGGTTGCGCGAATGCGAGCACGACAAATTCGTCGTTGAATAAGGAACAAGGTCAAAGTAATACATCGCTCATCAAGAGTTTGTTGGCGACAAAGGTAAACGAATGCATGACCCCAGTCAGCATGAGGACAGACTGCCAATCAGTAGCTCAGGTTGCCGCtcgacaacaacaacaaaggcTCTTAGCGCAACAAAATCAACAGCAGCAAATCCAACAGGTTATACAGGAAGCAAAAACTCTTAAAACATTGGACACCACCAAGAATATACGCTTGAATGGTGCACGCCAATTGTTTCTCGAAAACGACGTTGCTGAATCAGTTGTTTCATCCACGACTCAAAGCCTTAATGCGAAAACGCGAAGGGAACCCCCACAGCCGCCACCTCCGTTGGCACCGTTGAGCAATATACGCAACAACAAAGTGAAGATCGAAAATGAGGACAGCGACTCCACGGGGAATAACTCGTTAGCGTCTAGTACTGGTGTTGGGAACATTGGTACTGGTGGTGTATCGTCTACAGAAGATGGTGAAAACTCAGTGAACAGCTTCGATGGCCTATTAAATGGAGTGCCCAGTGTCGAGAACCCCGTCTGTATGAACGAAGACAGCAATTCCAAAGACTCGTTAAAGAATAGTTCAAACGTAATCAAGAAGTCGCTAATGCTGGCCGATTTGCTTGAGAAAAAGGTGGATAAGGATCCACCAATATTAAACGGTGTAATGGGAAAGGAGCTGCGTATTGGTGAGAAGGGTCTTGAATTAGTGGAAAATCACGTCGATAAAGTATTAAACAAAGATTCCACAGTTGTCGAAGCGAAAGTGAATAACGTGGACGGACGCACAGAGGAAAGCGAAAAGGTTGGTGTTAAACGACCTGCCAGTGATACCATTGCCGAGCCGGAAGCGAAGAAACCACACTTGACGAACAATATCAATGGAAAAGAACGCACAGAAACACCACCAGTGGCTTCAGTATCACAACCAgttcaagtgcaagcgcaagcaccaCCACAACTCGCACCTACGCCCCCTCCGATATCAACAACAGTGGTGCAACAGGTTCAACAGCCACAGCAGCAACCGATGCGTCAAGTATTTGTGGATAGCAATCAACAAGTCATTATGTCTCAACCGCGGCAGATAATCGTCTCTCAAGCTCCTATGGTCCTCCCTACAGGGACTCAAATAAAAACGCAAGCTGGTCAAACCGTCATTGTACAAAATACAGCCCAACAACGGACAAATGTGGTACAATCAAGCATGGGACCCATTATACTATCGCAAGGCTTACAAGGCCTGCAGGGGCAAATGCAACTTGTGCCAAGTGGTCAACCGGGTCAATTTGTTTTGCAAGCCGCTGGTCATCAAGGATTTGTGGTAgcgcaacaaacaaactcacAAGGGCAATCACAGGCCGTATTATTGGCGCAAGCCCCACAACAGCAGGGAACAAAGACCATTATCATTCTGCAACCAAATTCAAATACCGCAACGCACCACCAGAAAGTGGTGATGACTCCCCAAGGGCAACAAATGGTTGTTACGCAAGTGCAACGCCCAATTATACAGCAGTCAACAGTTGGCAATATGGTTACAACAACGGGGGTGGTTAAATCTGCGACTGCAACTGTCGTAACTTCTCAGGCCAACCAGACTAATGGTGTTGCATCTCCGCAACCTCAGTTAGAGAAAAAGATGGAAATAAAAACAGAAGATTCAACAAAAATGGTAATGGCCACGATAGTTACATCGACTGTGACTACGAATGCTTCAACTGCTACTTGCACAGCTACAGTAGCAAACAAAATTAAGCCGAAGCCAACCAGAGATATTAACACGCTATACGTATGCGAATGGGGCGACTGTCAAGTAGATACAAAGTTTAAGTCAGCGAATCAAGTATTTTTGCACGTGTGTAAAATGCACATCCCTGATACGAACGATGAGCTGCTCTGTCAATGGGATCGTTGTGATAATATGAAGAGGAAGCGGTTTTCGCTAATGACACATATCAATGACAAACATTGCAATACTGAGtcTATGAAGGCGGCGCAAATAAAACGTAAACACATCCAACAAACGGGTAAAACTGATCCACCGGCACCGCCGCAAACCACACAGCATCCTGGCTACGCACCGGATGCCGCGTTCCATGCCATTAAACGGCATGCTCTCGAATTCGTCAACCCAAAGGAGTTACAAAGGTCTACTGTAAAGCAAGGAACACCTAGTGTTCCAAGTCCTATGCCCCGATCGGGCGCCTCTTCCGATCAGGACGATAACGAAGGACCAGTCACCAAGAGTATCAGACTGACTGCATCACTTATTCTAAGAAATCTCGTTATTTATAGCAACAATAGTAGAAGGTACTTAAAGCCCTATGAGCCGCACTTAGCGAATGTCGCCTTAAGCAACGTAGAGTCTTCTAGAACCATTGCACAAGTATTGTACGATTTGAATGAAGGGGCGAGTCACAGGTGA
- Protein Sequence
- MRLQLASEQLRSTTAAASVMVTATYTTTAAAALTPFRQLPKLNGREVDLHMLYTLVSEQGGWMKVNSKNSWSDFFEPLEVPDNCVNASVALKQIYLRYLARWEKVHLGDEADRGSDDDEENRHKRGASARNMHAVSSIYNYHQHNIADATREFNNLSTDLYKPSDYDRLGLSLLSPLPNEQDFAINVCTLLSNDGKHTLKLEKHPILLDYLLAHAGVFNHGSLRNVLSYSYVCIRKQNINTFWKEALDSEEFLDLTNENLYINDVKNTDVVPIVDLSKELAKEDCPVTLLTQIDDDELFASEVSAVETISSRSKSKFDFDPTDKELFNLGRNLGTRDYMGQRVLQIATILRNLSFFDENVSVLVRNRTFVRFTLLCACSKWNQLMNLGLEMLGNLSGEFLVRDLERDKISKSMIKIVTRGLQMEDRNWCITALEVLNKLSQNEANEDILLRCLELSVYERVCSFLTIHDVMLLIYTLECLYSLSSLGERACNYIVNIYGAVDTLVSLVTVEGKSYGPKACIGMKLVETVTGTAPAQQQSASNSSSVATPSTTTVSVSSTSIASPSAPTAVLVQSLVPVKTSAPSTPMRQVAIAPQRLITSSPSPASTATSTTPSVAQPIASQQLQQKHAHQQSIQENEQFALTWLRATYELASNCKVDHQELYKHYINSCAKIGRRGVIAPNHFPRCVRSVFGGTVGPNPEKPGTTNTPQFYEGIKVRAQPLVINVQSTTTQVTPTITSAKGVVVRRKLPSTNPITLSPDASADPPPASPASPILKAQLSAPPKPREAAPATTIADGAKSQVMAHPHLSQALLGSGCANASTTNSSLNKEQGQSNTSLIKSLLATKVNECMTPVSMRTDCQSVAQVAARQQQQRLLAQQNQQQQIQQVIQEAKTLKTLDTTKNIRLNGARQLFLENDVAESVVSSTTQSLNAKTRREPPQPPPPLAPLSNIRNNKVKIENEDSDSTGNNSLASSTGVGNIGTGGVSSTEDGENSVNSFDGLLNGVPSVENPVCMNEDSNSKDSLKNSSNVIKKSLMLADLLEKKVDKDPPILNGVMGKELRIGEKGLELVENHVDKVLNKDSTVVEAKVNNVDGRTEESEKVGVKRPASDTIAEPEAKKPHLTNNINGKERTETPPVASVSQPVQVQAQAPPQLAPTPPPISTTVVQQVQQPQQQPMRQVFVDSNQQVIMSQPRQIIVSQAPMVLPTGTQIKTQAGQTVIVQNTAQQRTNVVQSSMGPIILSQGLQGLQGQMQLVPSGQPGQFVLQAAGHQGFVVAQQTNSQGQSQAVLLAQAPQQQGTKTIIILQPNSNTATHHQKVVMTPQGQQMVVTQVQRPIIQQSTVGNMVTTTGVVKSATATVVTSQANQTNGVASPQPQLEKKMEIKTEDSTKMVMATIVTSTVTTNASTATCTATVANKIKPKPTRDINTLYVCEWGDCQVDTKFKSANQVFLHVCKMHIPDTNDELLCQWDRCDNMKRKRFSLMTHINDKHCNTESMKAAQIKRKHIQQTGKTDPPAPPQTTQHPGYAPDAAFHAIKRHALEFVNPKELQRSTVKQGTPSVPSPMPRSGASSDQDDNEGPVTKSIRLTASLILRNLVIYSNNSRRYLKPYEPHLANVALSNVESSRTIAQVLYDLNEGASHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00049045;
- 90% Identity
- iTF_00048448;
- 80% Identity
- iTF_00048448;