Alep002060.1
Basic Information
- Insect
- Aleiodes leptofemur
- Gene Symbol
- -
- Assembly
- GCA_963942555.1
- Location
- OZ012609.1:19257118-19261710[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.77 1.1e+02 4.3 7.9 2 23 202 224 202 224 0.97 2 20 0.0087 1.3 10.5 1.9 1 23 304 326 304 326 0.97 3 20 0.01 1.5 10.2 0.5 1 23 375 397 375 397 0.98 4 20 0.0074 1.1 10.7 0.3 1 19 433 451 433 453 0.95 5 20 0.053 7.8 8.0 1.9 1 23 466 489 466 489 0.96 6 20 0.93 1.4e+02 4.1 7.8 1 23 494 516 494 516 0.97 7 20 0.0004 0.059 14.7 0.6 3 23 542 562 540 562 0.96 8 20 1.9e-06 0.00028 22.0 0.2 2 23 590 612 589 612 0.96 9 20 4.7e-05 0.007 17.6 0.2 1 23 618 641 618 641 0.94 10 20 0.0018 0.27 12.6 1.0 1 23 652 675 652 675 0.96 11 20 5e-05 0.0074 17.5 0.9 3 23 685 705 683 705 0.92 12 20 0.0011 0.17 13.3 0.1 2 20 762 780 761 780 0.95 13 20 0.00034 0.051 14.9 0.0 2 23 799 820 798 820 0.97 14 20 0.00021 0.032 15.5 0.5 2 23 836 857 835 857 0.96 15 20 0.00011 0.016 16.5 0.3 1 23 877 900 877 900 0.91 16 20 0.065 9.7 7.7 0.3 2 23 971 993 970 993 0.95 17 20 9e-05 0.013 16.7 1.5 2 23 1015 1037 1014 1037 0.94 18 20 0.11 17 6.9 0.3 1 23 1043 1067 1043 1067 0.95 19 20 6.1 9.1e+02 1.5 0.9 1 23 1072 1095 1072 1095 0.82 20 20 0.14 20 6.7 0.1 2 23 1126 1148 1126 1148 0.93
Sequence Information
- Coding Sequence
- ATGGATGAAGTCATTGAATTGGAGAGTTTTCACAATGTGTGTAGACTCTGTCTATCATTGGACGAGGCTAATTCACCAATATTTGGACAACAAGAGTCTAATTCACAGTTGGCTGAGAAAATACAAGCTTGCTTATCAATTGAGGTGTCTTCTGATGATAAATTGACTACTCTTATTTGCGGTAGCTGCAGCAAGAGTGTTAATCAGTGGCACACGTACAGAGAATCATGTCTGAGGTCACAGGACAAGCTACAGAGATGGCTAGCCAAGCGTGGAGATCTTATAACGAATATAAAATCGGAGCCAATCGACCCAGAAGAATCGGACATGTACCAGGACACGATGGAACGTTCAGACGGTTCCCCAGAAGAGGCAGCTGATACTCCCAGAGTCTCAAAACGTCGACGTTCCTCCAGTCTTCCGTCCTCAGACGTTGAATCAGTATCCGGCACTCAGCTTCTTCTGAATCCAATGGCAGTAGCAGCAAAAGAGATTCTCGAGCCAGCCCAACCAGACACCTACAGTCCTCTTCGTTCATCGCaccgtaaaaaattaaaacgcCGTCAAAACACACATTTCCGTGGTGTAAAAGTGTTTAAACGTAAGTGTCCACACTGTAAAATACATTtgcattcaaaattttcatacacAAAGCACATGGAGAGATATCACCGTGGTGCACCAATGAatccatcatcatcatcatcaaaaaatccagCAAGACGTAATGGTCCATTGTCATTTAATCTAGCTACTGATAAATCAGACGGAGTTGATGCTGACGACGACGATGACGGTGATGATGAGGATATTGAAATGGTTGAAGATGTCGAAGACGAGTTGATATCAATGGAAAAGAATTCACCATTGACACAGGTTCAAGAGAACATAATAAGCCAATTAAAGACATTCTCCTGTTACTCGTGTCAGCAAGTGTTCAGTGATCGTCGTAGTACACTGAATCACATACGCCAGCACATGCCAGACTTGCGTCCATACACTTGTATAGCATGCCTAACTGAATTTCCAGATCGTTCGATTTACAAACTTCACTGTGGTGCATCATTTGAGTGTGCTATGAAAATAGCCCTAGTTGTACCAAAACACGGTACTGAGAAATATTTCACGTGCAACATGTGCCTTAGACCATTGCCAAATCGTAAAGAATTACTTAGTCACTTATCAAAGCACTCGGACAAGCAGTACGAGGCACTAACAAGCAGTGTTCCACCCAAGTCTCCACCCAAACAAAAACCAATACAGGGCCCATATCGTCATGGTGATCCAGCGCACAATCACACGTGCGACTACTGTGGCATGATATATCGCTACAAGCCAAACATGCTGAAGCACGAGGATCTCTGCAAGCGCCTTCCACCAGACGAACGAACGTCCTACCGTTGTGCACACTGTGGCATGACGTTCCTTGTCTTCAAGAAATTCCAATCACACATCAACATCGAGCACAATCGCAAAGACTTTGTTTGCTTCACTTGCAATGCAAAATTCAAGCACTCCAACGAGTATCTGGAGCATCATCAGCATCATCGCAGTGGTGGCAAATTGGAGACCAAGTGGAAGACCTACAATTCAAGTTCACCGAAAGTTACGATGAAATTTGGCTGTCCAGTATGCCCGAAAGAGTTCATGACTAAGGAGGAATTGATACAGCACAGGAGTCATCACTCGAAGGTGAAAGGACTAGAGAATAATGAGATTGATGACGAGGCTAATTATGCGATTACTGAGAATAATGGTAAGAGCACAGAGTGCGTGACTTGTgggaaaatatttgctaattaTCCGAATTTGAGAAGACACATTAGAACAGTGCACATTGTTGAGGGACGATTCAGTTGTCCAAAGTGTCCGAAAACGTTTACGAGTGAAGATCTCTGGAATCAGCATGCGGAAAGAGCTCATCCGAAGGACGTTGCTATTGATGGCACAGGATTTCGGTGTCTGCAGTGCAAGAAGGTATTGGATACGCAGGAGGGCTTGAATCATCATTTGCAGGAGGAGCATGGAATGGCGGAGGATGATCATCTTGCTTGTGACATATGCGGCAAACGATTCAGTAATGAGACGTCTTTGAAGATCCATCGAGGCCATCATTTCCGTCGTGACTCGCGTCTCAGCATCAGGACACTACCACATCCGCTGGACCAAGTGCAGGTGGAGCTGCAGGAAGGTCCAAATGAGTTGAACCTTTCTCCACGACCGGCAAAGGCCAAAAAGTCTTTTCCCTCGCCGACTTTCAAACAACCGTCTCCCGGTAATCTCCAATGTGCTGTTTGCGACGAGACATTCTCCGATGTTACCGAGTTGCGCAAGCACCTCTGGGAAGTGCACTGCACCAAGCACAAGAGCGAGAAATCCTTCGTCGGTGATCTCCAGTGTGAGCTGTGTACAAACGTCTTTCCAGACTCCCAAGCTCTGGAGGAGCACATGAGATGGCACAAGGAGAATCCAATACTTTCTGACGTCACCCGACCAATCGACATTTCCTGCGACATATGCGGTAAGTATTACAGCTCGACAAAAGCACTGTGGAAACACAAGAAACTTCACAAGTCAACTGCCTCGGGAATTAAGTTCCATTCGCTCAAGAAAATAGCGCCGACATCGTTTCCCTGTCCTGTCTGCAAGAAAGTCTTTAACAATGAGACGTCAATGAAGAAGCACAAAGCAGCGGCGCATTATGTGCGCAAGACTATTGGATCTATCGCGAGAAAAGCTGCAGCTGCAGCAGCTGCTGCTGTTGCACAGGCTGTTTCACCAGTCAGAACGGACGATGACTCACGACCAAAGAGACCGAAACTAGACTTTGATATTATTCGCAAAGCTTATCATCTTGGTGAACCTTCAGGGAGTAGCTTTGGAACACCAAATTCATCAAAGAAACCAGTTACCTGCGGTATTTGCAAGAAACTTCTGCCAAGTATGAGCTCATTGTACAAGCATCGTCAAAATGTTCATAAAACAAGCATCGGCAAACCACTTGAGGTTGACGAGGGTGAAGTCAATGAAGGCGATGGTGTACCATGCACAGAGTGCCACAAAGTCTTTTCAAATACCGCTAATATGAAACAACATTACACAAAAGTTCATGGCAATGGTGACAAACATTACTGTACAATGGACGATTGCGATGAAGCATTTGACACATCATTGGCTAAACAGgcacatgaaaaaatacatatgaATGTACTTTACAGATGTACACTATGCTCGAGGCACATGTTTAATCGTAGTGCAATTGACAGTCATCTTGCCAATGAACATGGTGATGatttgaatgatgaaaaaagtgataaacagttttataaaaaaactgatttggGAAGTTTTGCTGTTAAGGGAGCAGATGGACGTGTTTGTCCAATTTGTAAGATTAAGTATCCCAATATTAAAGCTATGAAGATACATTATGTTAAAATACATGAGGGAGCAAGTTAA
- Protein Sequence
- MDEVIELESFHNVCRLCLSLDEANSPIFGQQESNSQLAEKIQACLSIEVSSDDKLTTLICGSCSKSVNQWHTYRESCLRSQDKLQRWLAKRGDLITNIKSEPIDPEESDMYQDTMERSDGSPEEAADTPRVSKRRRSSSLPSSDVESVSGTQLLLNPMAVAAKEILEPAQPDTYSPLRSSHRKKLKRRQNTHFRGVKVFKRKCPHCKIHLHSKFSYTKHMERYHRGAPMNPSSSSSKNPARRNGPLSFNLATDKSDGVDADDDDDGDDEDIEMVEDVEDELISMEKNSPLTQVQENIISQLKTFSCYSCQQVFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPLPNRKELLSHLSKHSDKQYEALTSSVPPKSPPKQKPIQGPYRHGDPAHNHTCDYCGMIYRYKPNMLKHEDLCKRLPPDERTSYRCAHCGMTFLVFKKFQSHINIEHNRKDFVCFTCNAKFKHSNEYLEHHQHHRSGGKLETKWKTYNSSSPKVTMKFGCPVCPKEFMTKEELIQHRSHHSKVKGLENNEIDDEANYAITENNGKSTECVTCGKIFANYPNLRRHIRTVHIVEGRFSCPKCPKTFTSEDLWNQHAERAHPKDVAIDGTGFRCLQCKKVLDTQEGLNHHLQEEHGMAEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRTLPHPLDQVQVELQEGPNELNLSPRPAKAKKSFPSPTFKQPSPGNLQCAVCDETFSDVTELRKHLWEVHCTKHKSEKSFVGDLQCELCTNVFPDSQALEEHMRWHKENPILSDVTRPIDISCDICGKYYSSTKALWKHKKLHKSTASGIKFHSLKKIAPTSFPCPVCKKVFNNETSMKKHKAAAHYVRKTIGSIARKAAAAAAAAVAQAVSPVRTDDDSRPKRPKLDFDIIRKAYHLGEPSGSSFGTPNSSKKPVTCGICKKLLPSMSSLYKHRQNVHKTSIGKPLEVDEGEVNEGDGVPCTECHKVFSNTANMKQHYTKVHGNGDKHYCTMDDCDEAFDTSLAKQAHEKIHMNVLYRCTLCSRHMFNRSAIDSHLANEHGDDLNDEKSDKQFYKKTDLGSFAVKGADGRVCPICKIKYPNIKAMKIHYVKIHEGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048134;
- 90% Identity
- iTF_00046425;
- 80% Identity
- -