Aalt001437.1
Basic Information
- Insect
- Aleiodes alternator
- Gene Symbol
- -
- Assembly
- GCA_963921955.1
- Location
- OY998097.1:14209813-14214368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.77 99 4.3 7.9 2 23 202 224 202 224 0.97 2 20 0.0087 1.1 10.5 1.9 1 23 304 326 304 326 0.97 3 20 0.01 1.3 10.2 0.5 1 23 375 397 375 397 0.98 4 20 0.0074 0.95 10.7 0.3 1 19 432 450 432 452 0.95 5 20 0.052 6.7 8.0 1.9 1 23 465 488 465 488 0.96 6 20 0.93 1.2e+02 4.1 7.8 1 23 493 515 493 515 0.97 7 20 0.0004 0.051 14.7 0.6 3 23 541 561 539 561 0.96 8 20 1.9e-06 0.00024 22.0 0.2 2 23 589 611 588 611 0.96 9 20 4.7e-05 0.006 17.6 0.2 1 23 617 640 617 640 0.94 10 20 0.0018 0.24 12.6 1.0 1 23 651 674 651 674 0.96 11 20 5e-05 0.0064 17.5 0.9 3 23 684 704 682 704 0.92 12 20 0.0011 0.14 13.3 0.1 2 20 761 779 760 779 0.95 13 20 0.00034 0.044 14.9 0.0 2 23 798 819 797 819 0.97 14 20 0.00021 0.027 15.5 0.5 2 23 835 856 834 856 0.96 15 20 0.00011 0.014 16.5 0.3 1 23 876 899 876 899 0.91 16 20 0.065 8.4 7.7 0.3 2 23 970 992 969 992 0.95 17 20 9e-05 0.012 16.7 1.5 2 23 1014 1036 1013 1036 0.94 18 20 0.11 15 6.9 0.3 1 23 1042 1066 1042 1066 0.95 19 20 6.1 7.9e+02 1.5 0.9 1 23 1071 1094 1071 1094 0.82 20 20 0.14 18 6.7 0.1 2 23 1125 1147 1125 1147 0.93
Sequence Information
- Coding Sequence
- ATGGATGAAGTCATTGAATTGGAGAGTTTTCACAATGTGTGTAGACTCTGTCTATCAATGGACGAGGCCAATTCACCAATATTTGGACAGCAAGAGTCCAATTTACAGTTGGCTGAGAAAATACAAGTTTGCTTATCAATTGAgGTGTCGTCTGATGATAAATTGACCACTCTTATTTGCGGTAGCTGCAGCAAGAGTGTTAATCAGTGGCACACGTACAGGGAATCATGTCTGAGGTCACAGGAGAAGCTACAGAGATGGCTAGCCAAGCGTGGAGATCTTATAACGAATATAAAATCGGAGCCAATCGACCCAGAAGAATCGGACATGTACCAGGACACGATGGAACGTTCAGACGGTTCCCCAGAGGAGGCAGCTGACACTCCAAGAGTCTCAAAACGTAGACGCTCATCCAGTCCTCCGTCCTCAGACGTTGAATCAGTACCTGGCACTCAGCTTCTTCTGAATCCAATGGCAGTAGCAGCAAAAGAGATTCTCGAGCCAGCCCAACCTGACACCTACAGTCCTCTTCGTTCATCGCatcgtaaaaaattaaaacgcCGTCAGAACACACATTTCCGTGGTGTAAAAGTGTTCAAACGTAAGTGTCCACACTGTAAGATACATTtgcattcaaaattttcatacacAAAGCACATGGAGAGATATCACCGTGGTGCACCAATGAatccatcatcatcatcatcaaaaaatccagCAAGACGTAATGGTCCATTGTCATTTAATTTAGCTACTGATAAATCAGACGGAGTTGATGCTGACGACGACGATGACGGTGATGATGAGGATATTGAAATGGTTGAAGATGTCGAAGACGAGTTGATatcaatggagaaaaattcaccaTTAACCCAGGTTCAAGAGAACATAATAAGCCAATTGAAGACATTCTCGTGTTACTCGTGTCAGCAAGTATTCAGTGATCGTCGTAGTACACTGAATCACATACGCCAGCACATGCCAGACTTGCGTCCATACACTTGTATAGCATGCCTAACTGAATTTCCAGATCGTTCAATTTACAAACTTCACTGTGGTGCATCATTCGAGTGTGCTATGAAAATAGCCCTAGTTGTACCAAAACACGGTACTGAGAAATATTTCACGTGCAACATGTGCCTTAGACCATTGCCAAATCGTAAAGAATTACTTAGTCACTTATCAAAGCACTCGGACAAACAGTACGAGGCACTGACAAGCAGTGTACCCAAGTCTCCACCCAAACAAAAACCAATACAGGGCCCATATCGTCACGGTGATCCAGCGCACAATCACACGTGCGACTACTGTGGCATGATATATCGCTACAAGCCAAACATGCTGAAGCACGAGGATCTCTGCAAGCGCCTTCCACCAGATGAAAGAACGTCCTACCGTTGTGCACACTGTGGCATGACGTTCCTCGTCTTCAAGAAATTCCAATCACACATAAACATCGAGCACAATCGCAAGGACTTTGTTTGCTTCACCTGCAACGCGAAATTCAAGCACTCCAACGAGTATCTGGAGCATCATCAGCATCATCGCAGTGGTGGCAAATTGGAGACCAAGTGGAAGACCTACAATTCGAGTTCACCGAAAGTTACCATGAAATTTGGCTGTCCAGTCTGCCCGAAAGAGTTCATGACTAAGGAGGAATTGATACAGCACAGGAGTCATCACTCGAAGGTGAAGGGACTAGAAAACAATGAGATTGATGACGAGGCTAATTATGCAATCACTGAAAATAATGGTAAGAGTACAGAGTGCGTAACTTGTgggaaaatatttgctaattaTCCGAATTTGAGAAGACACATTAGAACAGTGCACATTGTTGAGGGACGATTTAGTTGTCCAAAGTGCCCAAAGACGTTTACGAGTGAGGATCTCTGGAATCAGCATGCGGAAAGAGCTCATCCGAAGGACGTTGCGATTGATGGAACAGGATTTCGGTGTTTGCAGTGCAAGAAGGTATTGGACACGCAGGAGGGCTTGAATCATCATTTGCAGGAAGAGCATGGAATGGCAGAGGATGATCATCTTGCTTGTGACATATGTGGCAAACGATTCAGCAACGAGACGTCATTGAAGATTCATCGAGGCCATCATTTCCGTCGTGACTCGCGTCTCAGCATCAGGACACTACCGCATCCACTGGACCAAGTGCAGGTGGAACTGCAGGAAGGTCCAAATGAGTTGAACCTCACTCCACGACCAGCGAAGGCCAAAAAATCTTTTCCCTCGCCGACTTTCAAACAAGCGTCTCCCGGTAATCTCCAATGTGCCGTTTGCGACGAGACATTCTCTGACGTTACTGAGCTGCGCAAGCACCTCTGGGAAGTGCACTGCACCAAGCACAAGAGCGAAAAATCCTTTGTCGGTGATCTCCAGTGTGAGCTGTGTACAAACGTCTTTCCAGACTCCCAAGCTCTGGAGGAGCACATGAGATGGCACAAGGAGAATCCAATACTGTCTGATGTCACTCGACCAATCGACATCTCCTGCGACATATGCGGTAAGTACTACAGCTCGACAAAAGCTCTTTGGAAGCACAAAAAACTCCACAAGTCAACTGCCTCGGGAATTAAGTTCCATTCGCTCAAGAAAATAACGCCGACATCGTTTCCCTGTCCTGTCTGCAAGAAAGTCTTCAACAATGAGACATCAATGAAGAAGCACAAAGCAGCGGCACATTATGTGCGCAAGACTATTGGATCTATAGCGAGAAAAGCTGCAGCTGCAGCAGCTGCTGCTGTTGCACAGGCCGTTTCACCAGTCAGAACCGACGATGACTCACGACCAAAGAGACCGAAATTAGACTTTGACATTATTCGCAAAGCCTATAATCTTGGTGAACCCTCGGGGAGCAGCTTTGGTACACCAAATTCATCAAAGAAACCAGTTACCTGCGGTATTTGCAAGAAACTTCTGCCAAGTATGAGCTCATTGTACAAGCATCGTCAGAATGTTCATAAAACAAGCATTGGCAAACCACTTGAGGTTGACGAGGGTGAAGTCAATGAAGGCGATGGTGTCCCATGCACCGAGTGCCACaaagttttttcaaataccGCTAATATGAAGCAACATTACACAAAAGTTCATGGCAATGGTGACAAACATTACTGTACAATGGACGATTGTGATGAAGCATTTGACACATCATTGGCTAAACAGgcacatgaaaaaatacatatgaATGTACTTTACAGATGTACACTATGCTCCAGGCACATGTTTAATCGTAGTGCAATTGACAGTCATCTTGCCAATGAACATGGTGATGatttgaatgatgaaaaaagtgataaacagttttataaaaaaactgatttggGAAGTTATGCTGTTAAGGGAGCAGATGGACGTGTTTGTCCAATTTGTAAGATTAAGTATCCCAATATTAAAGCTATGAAAATACATTATGTTAAAATACATGAGGGAGCAAGTTAA
- Protein Sequence
- MDEVIELESFHNVCRLCLSMDEANSPIFGQQESNLQLAEKIQVCLSIEVSSDDKLTTLICGSCSKSVNQWHTYRESCLRSQEKLQRWLAKRGDLITNIKSEPIDPEESDMYQDTMERSDGSPEEAADTPRVSKRRRSSSPPSSDVESVPGTQLLLNPMAVAAKEILEPAQPDTYSPLRSSHRKKLKRRQNTHFRGVKVFKRKCPHCKIHLHSKFSYTKHMERYHRGAPMNPSSSSSKNPARRNGPLSFNLATDKSDGVDADDDDDGDDEDIEMVEDVEDELISMEKNSPLTQVQENIISQLKTFSCYSCQQVFSDRRSTLNHIRQHMPDLRPYTCIACLTEFPDRSIYKLHCGASFECAMKIALVVPKHGTEKYFTCNMCLRPLPNRKELLSHLSKHSDKQYEALTSSVPKSPPKQKPIQGPYRHGDPAHNHTCDYCGMIYRYKPNMLKHEDLCKRLPPDERTSYRCAHCGMTFLVFKKFQSHINIEHNRKDFVCFTCNAKFKHSNEYLEHHQHHRSGGKLETKWKTYNSSSPKVTMKFGCPVCPKEFMTKEELIQHRSHHSKVKGLENNEIDDEANYAITENNGKSTECVTCGKIFANYPNLRRHIRTVHIVEGRFSCPKCPKTFTSEDLWNQHAERAHPKDVAIDGTGFRCLQCKKVLDTQEGLNHHLQEEHGMAEDDHLACDICGKRFSNETSLKIHRGHHFRRDSRLSIRTLPHPLDQVQVELQEGPNELNLTPRPAKAKKSFPSPTFKQASPGNLQCAVCDETFSDVTELRKHLWEVHCTKHKSEKSFVGDLQCELCTNVFPDSQALEEHMRWHKENPILSDVTRPIDISCDICGKYYSSTKALWKHKKLHKSTASGIKFHSLKKITPTSFPCPVCKKVFNNETSMKKHKAAAHYVRKTIGSIARKAAAAAAAAVAQAVSPVRTDDDSRPKRPKLDFDIIRKAYNLGEPSGSSFGTPNSSKKPVTCGICKKLLPSMSSLYKHRQNVHKTSIGKPLEVDEGEVNEGDGVPCTECHKVFSNTANMKQHYTKVHGNGDKHYCTMDDCDEAFDTSLAKQAHEKIHMNVLYRCTLCSRHMFNRSAIDSHLANEHGDDLNDEKSDKQFYKKTDLGSYAVKGADGRVCPICKIKYPNIKAMKIHYVKIHEGAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00048134;
- 90% Identity
- iTF_00048134; iTF_00047443;
- 80% Identity
- -