Agra004236.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aldrichina grahami
Gene Symbol
PRDM1
Assembly
None
Location
Contig86:650084-681541[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.6e-05 0.0015 18.4 2.5 1 23 898 920 898 920 0.99
2 5 1.1e-05 0.00044 20.1 5.1 1 23 926 948 926 948 0.98
3 5 2.3e-06 9.3e-05 22.2 4.3 1 23 954 976 954 976 0.98
4 5 0.00076 0.031 14.3 2.4 1 23 982 1004 982 1004 0.97
5 5 0.00013 0.0053 16.7 0.1 1 22 1010 1031 1010 1031 0.96

Sequence Information

Coding Sequence
ATGAATGTAGCAACACAATCTCAAATAATAAAACTAGAATCACAACAATTAGAGGCCACCACCACCATACATGTGTCCAGCATAAATAGCAGCTTAACGTCTGTAGGAAACTCAAAACAGAAATCACACAATTCCAGCGATATGAATCCGCCAACAGCAGCACGTAGTCCCTCGCCAGATGGCTCCAGGGATTATGATGTAACACGCATGAGAGAGGAAGACTTTGAACGCCTGGCTGTATACATAGTACCCGATGTACAGTGTGAGCGTGGTGTAAGCAATAGAGCCGATAAAACACTGCCACGCAGTTTAACCCTAAAACCATCGATGGTTTTTTCATCACCAAATGTTAAGACTGAAGGAGTTTGGAGTACTGGTGTTATACCACGTGGTACCCGTTTTGGACCCTTTGAAGGTGTTCCAACTCCTCACTATCCCAACGATTCAAATACGGCGCGTTACTTTTGGCGGGTGCAGGAAACACGCCATATAACATACGGGAATATAAAGATATTCAAAGATGATGATTATTATTATTTGGATGGCTCCGATCGTTCACAGTCGAATTGGATGCGTTATGTGGCCTCGGCCTATAGCCTGGACACCATGAATTTGGTGGCCTGCCAGCATCAGGAGAATATCTACTTCTATACCACACGCGATATTATGCCCAATGAAGAGTTAATGGTGTGGTATTGCAAGGACTTTGCAAAACGTTTGGGTTATGATGTAGATCCGGAACGTACTTTGTTTGGTGCCTGCAAGGAGGGGGCCGAAGATGATGAGGAAGGCGAGGTAGAGGCCGAGGAGGAACACGAAGGAGAAACAGAGGAGGAGTATGTGTGTCGCAAGAAGAGAGCCTGTTCACCGTATGATATGCCTGCACCCGAAATTCCTGCAGAAGTTGCCTACAATCATATAACCTATGTAATGGGTCTGCACTTACCGCCGCCACTCTCTACAGGTACACGCAATGAAAGGCGTTCACCTACTCCTAGTCCTTCCCCACCTAATGTCAATCAAACACAAAATACACACCCGCACATCCAACACAGCCATTCTGGTCATCAGTCAAGAACGCTGATCAGGCACTCAACGCTGCATCAGCCCCATCAAAATGTCTTGCATCTGAAGCAAGAACCTACCTCGGTCATTGTGCAAGATCATCATCACTTAGCCATGGACCAAGAGTGTGTTAATCAGAAGGACCACAAAGATGTAGGCAGTTCACCCATATCGCACAAAGAAGCCCAATACGAACACCAGCTGACGCCAAATGACGGTAGTGTACGTTCGGTACGTTCCGATGAGGGTTATCACAGCAATGAGTATCATGAAGATCGCCTAACGCCTTCGGGTGGCGATGATAGCGATACGGAGAGTGAACACAATTATGTTTTAGATTGTTCTAAAAAAGCCATTGCTCCCAAAGAAACCGTTATTGCCCATTCCCAGAAACCCTGCAGTACAGTTGCATCAGTGCCCTCAACAACAAATGCAACGGCCGCAGCGTCAACGGGAGAATGCTGCAAAAACGAATATAGAAAGTTCAAAGTGAAAATGCCTCTAAAATATGAATTTAAGAATAGTACCAAGACTGAAGCAAATAATGCCACCACCACTATCACCACTAACGCCAGCATCTCCTCAATCAAACAGGACGATTTACAGCACATAACGGCCAGCTCAAGTGAAGACGAGAATCGCACAGATTGCACCTCTTCTACGCAAATTGATGAAATGATGGAAGTAGATTGTCATTCGTCAAGAAGTGTTAATGATGAATCCACTGCCACCACCACACAACCAGCCTCCAGTACAGTTATTGTATTGGAAAACAGCCAAAAGCGCACAATAGTGCCCTTAACAAAGCCCTACTACGAAGCTGAGTCCAGCTCTCCCCCACCGTCGGGCCAAAGCTACATACGTTATACTCCACCCTCCAGCATTTTAGAGACAATTTTGACTGGTCAACATCAACATCGTCTAGAAACGGCAGCAGCCGCTGCTGCCGTTGTTGTAGCTTGTCGCCAGGCTAACTCAGCCACTCCTCCCCCCTCTTCGCCTACGGAAATGGCCTATTCCTATAAGAAGTCGCATCGTTATGGCAATGCTGTTAGCCCCGATTCTAGTTCCAATATGGTGGCAGAGCACAATACTCACGACAACGAAGCCGAACTACATCTGAATTCCACCATATGTAAGAAAGATCTCTGCTCTCCTCCGCCACCAACACATCAACAGCATCATTTACTATTCTCACCCAATGGTGTGCATGGAGCTTATGTCAATGATGGTCAACACACACCGCCTTACTCCACCTACTCCTCTTATTCCAACAGCAGTTTAAATGGACAATCAGTGAGCGTGTTACATGCACCCACCTCCACTTTCCACTCACCACCACACAGTGCTCAATCGCCCTTCGACAGACAATCGCATTGCTCCAGTGGCTCCAATCAAAACTTGCACTTACTGCAAGGCAGCACACAAATGTTAAATCATCCATTGATGCAACCTCTCACGCCTCTACAAAGACTATCACCTCTGCGCATTTCACCGCCCAGCAGCTTAAGTCCCGATGGGAACTCATGTCCACGCAGTGGCAGTCCTCTTAGTCCCAACTCCATGGCATCACGAGGCTACCGCTCCCTACCGTATCCGCTGAAAAAGAAAGATGGCAAAATGCACTACGAGTGCAATGTCTGCTGCAAAACATTCGGTCAATTGAGCAACTTAAAGGTACACCTACGCACGCATTCCGGCGAAAGACCCTTCAAGTGCAACGTCTGCACCAAGAGTTTCACCCAATTGGCCCATTTGCAGAAGCATCATCTGGTGCATACGGGTGAAAAACCCCACCAGTGCGATATCTGCAAGAAACGCTTTTCGTCCACATCAAATCTAAAGACCCATCTACGCTTACACAGCGGCCAAAAGCCATACGCTTGCGATTTATGTCCGCAAAAGTTTACACAATTCGTGCACTTGAAACTGCACAAGCGATTGCATACCAATGATCGTCCGTACGTCTGTCAAGGTTGTGATAAGAAATACATTAGTGCATCAGGTTTACGTACGCATTGGAAGACAACAAGTTGCAAGCCCAATAATTTGGAAGAGGAATTGGCCATGGCAGCGGCGGCAACATCAGAGTGTTTGGACAAAGATCACCCCGAACCAGACTCCAGGGAAGCATTCGAACAAATACAACAGCATATACATCCGCATCCTCATATGCGCCATAGCGATCATTTGAACCAGTCGCGCAGCATGGGCTTGTCGTCACAGCAAACGCATAGTCACATGCAACAACAACATGTTCCTATGCTGCATCAACATTTGCCACCTCCCTCATCAGCTGCTGCTGCCAATATGTTGCTCACAACTGCCAACCAAATCCATCAACATCAGCACCAACACCAGCACCAACAACACCAACATCAGCAGCAGCAGCAACAGCTGCTGCATCCACACCAACAACACTTACTACAACACCAATCACTCAAAGTTAAGCCCCAGATACACATGATGCCCTCAAATTCCCACGACTCTGGCTCAGCTGGCCCCAACAACATGTCCCATGCCCATGTAGCAGCCGCGGCGGCAGCACATGCGGCAGCGGCTGCCGCTGCAGCAGCTCATGCAGCCTCACAACACCCCTTGGGCCCGCCACAAGATTCCCGACCCTCCGTCATAGAATCCAATCAACCCATGATCATAGAGTGCACGTAA
Protein Sequence
MNVATQSQIIKLESQQLEATTTIHVSSINSSLTSVGNSKQKSHNSSDMNPPTAARSPSPDGSRDYDVTRMREEDFERLAVYIVPDVQCERGVSNRADKTLPRSLTLKPSMVFSSPNVKTEGVWSTGVIPRGTRFGPFEGVPTPHYPNDSNTARYFWRVQETRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLDTMNLVACQHQENIYFYTTRDIMPNEELMVWYCKDFAKRLGYDVDPERTLFGACKEGAEDDEEGEVEAEEEHEGETEEEYVCRKKRACSPYDMPAPEIPAEVAYNHITYVMGLHLPPPLSTGTRNERRSPTPSPSPPNVNQTQNTHPHIQHSHSGHQSRTLIRHSTLHQPHQNVLHLKQEPTSVIVQDHHHLAMDQECVNQKDHKDVGSSPISHKEAQYEHQLTPNDGSVRSVRSDEGYHSNEYHEDRLTPSGGDDSDTESEHNYVLDCSKKAIAPKETVIAHSQKPCSTVASVPSTTNATAAASTGECCKNEYRKFKVKMPLKYEFKNSTKTEANNATTTITTNASISSIKQDDLQHITASSSEDENRTDCTSSTQIDEMMEVDCHSSRSVNDESTATTTQPASSTVIVLENSQKRTIVPLTKPYYEAESSSPPPSGQSYIRYTPPSSILETILTGQHQHRLETAAAAAAVVVACRQANSATPPPSSPTEMAYSYKKSHRYGNAVSPDSSSNMVAEHNTHDNEAELHLNSTICKKDLCSPPPPTHQQHHLLFSPNGVHGAYVNDGQHTPPYSTYSSYSNSSLNGQSVSVLHAPTSTFHSPPHSAQSPFDRQSHCSSGSNQNLHLLQGSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSMASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDHPEPDSREAFEQIQQHIHPHPHMRHSDHLNQSRSMGLSSQQTHSHMQQQHVPMLHQHLPPPSSAAAANMLLTTANQIHQHQHQHQHQQHQHQQQQQQLLHPHQQHLLQHQSLKVKPQIHMMPSNSHDSGSAGPNNMSHAHVAAAAAAHAAAAAAAAAHAASQHPLGPPQDSRPSVIESNQPMIIECT