Basic Information

Insect: Phyto melanocephala
Gene Symbol: PRDM1
Assembly: GCA_941918875.1
Location: CALNXE010000859.1:82582-87369[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.9e-05 0.0032 18.4 2.5 1 23 880 902 880 902 0.99

2 5 1.2e-05 0.00095 20.1 5.1 1 23 908 930 908 930 0.98

3 5 2.4e-06 0.0002 22.2 4.3 1 23 936 958 936 958 0.98

4 5 0.00081 0.066 14.3 2.4 1 23 964 986 964 986 0.97

5 5 0.00014 0.011 16.7 0.1 1 22 992 1013 992 1013 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.9e-05	0.0032	18.4	2.5	1	23	880	902	880	902	0.99
2	5	1.2e-05	0.00095	20.1	5.1	1	23	908	930	908	930	0.98
3	5	2.4e-06	0.0002	22.2	4.3	1	23	936	958	936	958	0.98
4	5	0.00081	0.066	14.3	2.4	1	23	964	986	964	986	0.97
5	5	0.00014	0.011	16.7	0.1	1	22	992	1013	992	1013	0.96

Sequence Information

Coding Sequence: ATGAATGTAGCAACACAATCTCAAACAAAAATAGAATTACAACAACAGTTAGATGCTTCAATAAATGTGGCCAGCATAAATAGAAGCATAACGTCTGTAGGTAATATCAAACAGACACAACAACACAATTCCAACGATATGAATCCGTCAACGTCAGCtcgcagtccatcgccagatggtacgcgagactatgatgtaacacgtatgagagaggaagactttgaacgcctggctgtatacatagtacccgatgtacattgtgagcgtggcgttagcaatagagccgataaaacactgccgcgcagcttaaccctaaaaccatcgatggttttttcatcacctaatgttaagactgaaggagtctggagtactggtgttataccacgtggtacccgttttggtcccttcgaaggtgttccaactcctcactatcccaacgattcaaatacggcgcgttacttttggaggatatttaaagatgacgactattactatttggatggctcagatcgatcacagtccaactggatgcgttatgtggcctcggcttatagcttagacaccatgaacttagtggcatgccagcatcaggagaatatatatttctataccacccgcgacattatgccaaacgaagagttaatggtatggtattgtaaggattttgcaaaacgtttaggttatgatgttgatcctgaacgtactttgtttggagcctgcaaagaggtggccgaagatgatgaggaaggcgaggtcgaacctgaagacgaacatgaacaggaaatggaagaagaatatgtatgtcgtaaaaagagagcctgttcaccatatgacatgcccgctccagaaattcctccagaagtggcctacaatcatattacctatgtcatgggacttcacttaccGCCGCCACTTTCCTCGAGCACACGCAACGAAAGACGATCGCCTTCCCCTTGTCCCTCCCCACCAAACGTTAATCAAACACAAACTGTACACCCGCATATCCAACACGGCCATACGGGTCATCAGTCTAGAACTTTGATAAGGCATTCAACGCTGCACCAACCTCATCAAAATGTTTTGCATCTTAAGCAAGAACCTACCTCGGTCATTGTACAAGATCATCAGTTACCAATGGACCAAGAGTGTATAAATCAAAAGaacgacaaagatataggaagttcacccattttgcacaaagaagcccagtacgaacatcagctaacacccaacaatggtagtgtacgttccgtacgttctgacgagggctatcacagcaacgagtatcatgaagatcgtttaacgccctcaggtggcgatgatagtgataccgaaagtgaacacaattatgtcttggattgctccaagaaagccattgctcccaaagaaaccgttattgctcattcccaaaaaccctgtagtacagttgcgtcagtgcccacgactaatgccgcatctgcagcgacgaccggggaatgctgcaaaaacgaatacagaaagttcaaagtgaaaatgcctctaaaatatgaatttaaaaataGTACCAAGACTGAAGCAAACAATGCCACCACCACTATCAGCAATACAACGATCACCTCAATTAAACAGGATGATTTACACATAACCGCCAGCTCAAGTGAAGATGAAAATCGCACAGACTGCACCTCCTCAACTCAAATTGATGAAATAATGGAGACTGAATGTCGTTCTTCTAGAAGTGTTAGTGACGAAGCAACTGCTACAACTACACAGCCTGCATCGAGTacagttatagtgttggaaggcagccaaaagcgcacaatagtgccattaactaagcaatattacgaagccgagtctagctctccgccacccacagcacagggctacatacgctatacacctccctctagcattttagagacgatattgacaggccaacaccaacatcgtttagaaacggcagctgcagcagctgccgttgtagtggcttgccatcaagctaactcagccacacctccaccctcatctcccactgaaatggcatattcttataagaagtcgcatcgttatggcaatgccgttagtcccgattctagttcaaatttggtagccgaacACAATGTTCACAATATCGAGACCGAACATCATCCGAACTCCACAACGTTTAAGAAAGATCTTTGCTCTCCTCCGCCGCCATCCCATCAGCATCAACATGTACTATTCTCACCAAATGGTGTGCATGGCGCTTATATCAATGATGGTCAACACTCACCGTCTTACTCCACCTACTCTTCATATTCTAATGGCAGTTTAAATGCACAATCAGTAAGCGTTCTACATgcacccacctctacttttcactcaccaccccacagtgctcaatccccgttcgacagacaatcgcattcctctagtggttccaatcaaaatattcatctgctgcaaggcagcactcaaatgttaaatcatcctttaatgcaacctctaacgcccctacaacggctttctcccctgcgcatttcaccacccagcagtcttagcccagatggaaactcttgtcctcgtagtggcagtcctcttagtcccaattcattggctgctcgtggctaccgatctttgccgtatccgctcaaaaagaaagatggtaaaatgcattacgaatgcaatgtgtgctgtaaaacttttggccaattaagcaatttaaaggttcatcttcgcacccattccggtgaaagaccctttaagtgcaatgtctgcaccaagagtttcacacaattagcacatctgcaaaaacatcatctcgtgcatacgggtgaaaaaccccatcagtgcgatatttgtaagaaacgtttttcgtccacctccaatttaaagacccatctacgcttgcacagcggtcaaaagccatacgcttgcgatttatgtccgcaaaagtttacacagtttgtgcatttgaaactgcacaaaagactacataccaatgatcgtccgtacgtgtgtcaaggttgtgataagaaatacataagtgcatcaggtctacgtacacattggaagaccaccagctgcaagccaaacaatttggaggaagaactggctatggcggcggctgccacatcggagtgtcttgataaagaccatcttgaaccagattccagagaggcatttgaacaaatacaacagcatatgcatccACACATGCGCCATGCCGATCATATAACCCAAGCCAGGGGAATAGGTCATACGTCACAACAAACGCATAATCATATGCAACAACAACACGTTCCTATGATGCATCAACATTTGCCACCTCCCTCATCCACAGCTGCTGCCAACATGCTACTAACAACGGCCAACCAAATCCATCCAAATCAGCATCAACAGCAACATCAGCAGCAACAACTTCTTCATCCACACCAACAGCATCTAATGCAACATCAATCACTCAAAGTAAAACCCCAGATACACATGATGCCAACCAATTCTCATGACGCCGGCTCAAGTGGACCCAACAGCATGTCCCACGCCCATGTAGCAGCTGCAGCCGCGGCACATGCGGCGGCCGCTGCTGCAGCTCATGCAGCCAACCAGCATCCTCTGGGTCCGCCACAAGACTCCCGTCCCTCTGTCATAGAATCAAATCAACCCATGATAATAGAGTGTACGTAA
Protein Sequence: MNVATQSQTKIELQQQLDASINVASINRSITSVGNIKQTQQHNSNDMNPSTSARSPSPDGTRDYDVTRMREEDFERLAVYIVPDVHCERGVSNRADKTLPRSLTLKPSMVFSSPNVKTEGVWSTGVIPRGTRFGPFEGVPTPHYPNDSNTARYFWRIFKDDDYYYLDGSDRSQSNWMRYVASAYSLDTMNLVACQHQENIYFYTTRDIMPNEELMVWYCKDFAKRLGYDVDPERTLFGACKEVAEDDEEGEVEPEDEHEQEMEEEYVCRKKRACSPYDMPAPEIPPEVAYNHITYVMGLHLPPPLSSSTRNERRSPSPCPSPPNVNQTQTVHPHIQHGHTGHQSRTLIRHSTLHQPHQNVLHLKQEPTSVIVQDHQLPMDQECINQKNDKDIGSSPILHKEAQYEHQLTPNNGSVRSVRSDEGYHSNEYHEDRLTPSGGDDSDTESEHNYVLDCSKKAIAPKETVIAHSQKPCSTVASVPTTNAASAATTGECCKNEYRKFKVKMPLKYEFKNSTKTEANNATTTISNTTITSIKQDDLHITASSSEDENRTDCTSSTQIDEIMETECRSSRSVSDEATATTTQPASSTVIVLEGSQKRTIVPLTKQYYEAESSSPPPTAQGYIRYTPPSSILETILTGQHQHRLETAAAAAAVVVACHQANSATPPPSSPTEMAYSYKKSHRYGNAVSPDSSSNLVAEHNVHNIETEHHPNSTTFKKDLCSPPPPSHQHQHVLFSPNGVHGAYINDGQHSPSYSTYSSYSNGSLNAQSVSVLHAPTSTFHSPPHSAQSPFDRQSHSSSGSNQNIHLLQGSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLAARGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDHLEPDSREAFEQIQQHMHPHMRHADHITQARGIGHTSQQTHNHMQQQHVPMMHQHLPPPSSTAAANMLLTTANQIHPNQHQQQHQQQQLLHPHQQHLMQHQSLKVKPQIHMMPTNSHDAGSSGPNSMSHAHVAAAAAAHAAAAAAAHAANQHPLGPPQDSRPSVIESNQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045637;
90% Identity: -
80% Identity: -