Basic Information

Insect: Cordilura impudica
Gene Symbol: Prdm1
Assembly: GCA_963682025.1
Location: OY821519.1:3382032-3386764[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.9e-05 0.015 18.4 2.5 1 23 905 927 905 927 0.99

2 5 1.5e-05 0.0045 20.1 5.1 1 23 933 955 933 955 0.98

3 5 3.1e-06 0.00094 22.2 4.3 1 23 961 983 961 983 0.98

4 5 0.001 0.31 14.3 2.4 1 23 989 1011 989 1011 0.97

5 5 0.00017 0.053 16.7 0.1 1 22 1017 1038 1017 1038 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.9e-05	0.015	18.4	2.5	1	23	905	927	905	927	0.99
2	5	1.5e-05	0.0045	20.1	5.1	1	23	933	955	933	955	0.98
3	5	3.1e-06	0.00094	22.2	4.3	1	23	961	983	961	983	0.98
4	5	0.001	0.31	14.3	2.4	1	23	989	1011	989	1011	0.97
5	5	0.00017	0.053	16.7	0.1	1	22	1017	1038	1017	1038	0.96

Sequence Information

Coding Sequence: ATGAATGTAACCACACATTCTCAAAAACAatcagaaacaacaacacaacaatCGGACACAACTCTAAATGTACCCACCACCACATCGAACAGCAGCAATAGCAACAATAATAGCTCACCGGTTATAGAAATTATAGAACAGAAACACAATACAAGTGTCATGAATCCTACAACAGTCCAAATAGCACGCAGTCCATCACCAGATGGTTCTTGCGATTATGATGTGACACGTATGAGAGAAGAAGACTTTGAACGTCTGGCCGTCTATATAGTACCCGATGTGCAATGTGAACGAGGTATAGCCAACAGAGCTGATAAAACATTGCCACGCAGTTTGACACTTAAACCATCTTTGGTATTTCTATCACCAAATGTTAAGacTGAAGGAGTTTGGAGCACTGGTGTTATACCACGCGGCACCCgctttggaccttttgaaggtgTTCCCACTCCGCATTATCCCAACGATACAAATACGGCCAGATACTTTTGGCGGGTGCAGGGAACACGCCATATAACATACGGGAAtataaagATATTCAAAGATGATGATTACTACTATTTGGATGGATCAGATCGATCGCAGTCAAATTGGATGCGATATGTGGCATCGGCCTATAGTCTGGACACAATGAATTTGGTGGCGTGTCAGCATCaagagaatatatatttttacactACCCGTGATATCATGCCAAATGAAGAGTTAATGGTGTGGTACTGTAAAGATTTTGCCAAGCGTTTAGGCTATGATGTTGATCCTGAGCGTACACTATTCGGAGCCTGCAAGGAGGTTACCGACGAGGATGAGGAACCCGATGCAGAGACTGAGCTAGGGAGACAAGAACAGGAGGTGGAATATACGTGTCGCAAGAAGAGAACATGTTCATCGTACAGTATGCCCGCACCCGAAATTCCACCTGAAGTTGCCTATAATCACATAACATATGTTATGGGTTTACATCTACCACCGCCCGCATCTTCAACAACACACAACGAAAGACGCTCACCAACACCCAGTCCTTCCCCACCTGCCGTTAATCAAACACAAACTACACACCCGCATATCCATCACAGCCATTCAAGTCAACACACAAGGACGCTGATAAGACAGTCAACTCTACATCAGCCCCATCAGAATGTACTGCACTTGAAACAAGAACCTCCATCTGTCATTGTGCAAGACCATCATTGTGCACTGGATCAAGAGTGTGCGAATAGATGTCACAAAGATGTGGGCCATTCACCCAACTTACAAAAAGAGGCCCAATATGAACATCAATTGACTCCCAATGACGGTAGTGTACGATCCGTGCGTTCTGACGAGGGTTATCATAGTAATGAATATCACGAAGATAGACTTACACCGTCTGGTGGTGATGATAGCGACACTGAAAGTGAACATAATTATGTTTTGGATTGTTCAAAAAAAGCAATTGCTCCCAAAGAAACTGTTATTGCCCATGCTCAAAAGCCCTGCAGCAGCACAGTTGCCATAGCTCCAGTTGCCATGGCTGCAGCCACGACCGGAGAATGCTGCAAAAACGAATACAGAAAGTTCAAAGTGAAAATGCCActgaaatatgaatttaaaaatagtATCAAGACTGAAGCAACTAATGCCACTACTACCATCAGCAACACAACCACCTCTCCAATTAAGCATGAAGATCATCACATTAGTGCTACTTCGAGTGAGGACGATCATCGTTCTTCTTGTACGTCTTCTACACAAATCGATGAACCAATGGATGTAGACTGTCGGTCGTCAAGGGCCGCAAATCCTGAATCGACTGGAACAACTACACAGCCGGCTTCTAGCACAGTCATTGTTCTCGAACAAAGCCAAAAACGCACAATAGTCCCTTTGACAAAACAATACTATGAAGCCGAATCCAGTTCTCCACCACCCATGGCACAAAGTTATATACGTTACACTCCACCCTCAAGCATCTTAGAGACCATACTGACAGGTCAACATCAACATCGTTTGGAAACGGCAGCAGCGGCAGCTGCTGTGGCCGTGGCATGTCGTCAGGCCAACTCTGCAACACCGCCACCATCGTCACCTACAGAAATGGCTTATTCATATAAGAAGTCACAGCGTTACGGCAATGCTGTCAGTCCCGATTCTAGCTCAAACATGGTAGCAGACCATAATTTGCATGATAACGATGACGAATTACACTTAAATTCTACATCGTATAAGAAGGATATTGGCTCACCTCCACCACCGCCACATCAACAACATCAGCATCAGCATCATCATGTTCTTTTCTCGCCGAGTGGAGTTCCGGGAGCTTATGTCAACGATGGCCAACACACACCGCCTTATTCCAACTATTCGTCATATTCCAACAGCAGTGTAAATGGACAATCTGTTAGCGTTTTACATGCCCCGACATCGACCTTCCACTCACCACCACACAGTGCTCAATCACCATTTGACCGACAGTCGCACTCGTCGAGTGGCTCCAATCAAAATTTACACTTACTACAAGGCAGTACGCAAATGCTAAATCATCCATTAATGCAACCCCTAACACCGCTGCATAGACTGTCGCCACTTCGCATCTCTCCACCCAGTAGCCTTAGTCCCGACGGTAACTCTTGTTCTCGCAGTGGAAGTCCTCCTCTTAGTCCCAACTCAATGGCTGCACGTGGTTATCGTTCTTTGCCGTATCCACTCAAAAAGAAGGATGGCAAAATGCACTATGAATGCAACGTATGCTGTAAAACCTTTGGTCAACTAAGCAACTTAAAGGTTCACCTACGCACTCACTCCGGCGAAAGACCCTTCAAATGCAATGTATGCACTAAGAGCTTCACACAGTTGGCGCATTTGCAAAAACATCACTTAGTGCATACCGGAGAAAAACCACATCAATGCGATATCTGCAAGAAGCGCTTCTCTTCCACATCGAACCTTAAGACTCACCTTCGTCTGCACAGTGGTCAGAAACCATACGCTTGTGATTTATGTCCCCAAAAGTTCACTCAATTTGTTCATCTGAAATTGCACAAGAGGTTGCATACCAACGATCGTCCATACGTCTGTCAGGGTTGTGATAAGAAATACATTAGTGCCTCAGGGTTACGTACACATTGGAAGACCACAAGCTGTAAACCCAACAATTTAGAAGAAGAATTAGCCATGGCTGCTGCAGCCACATCCGAATGTTTAGATAAAGATCATCCCGAACCAGATTCCCGGGAAGCATTCGAACAAATACAACAGCATATACATCCACATATGCGCCACATGAATGGTAGCGCAGCCGAACATATGACAGCGCCCAGAGTTATGGGCCATCCATCCATTCAACCGCATAGTCATATGCAACAACAACATGTTCCAATGTTGCATTCACATTTGCCGCCTCCCTCATCTACAGCCGCCAATATGTTGCTCACAACTGCCAATCAACTGCATCATCACCAACACCagcatcagcagcagcagcagcttcaacaacaacaacaacaacaacaacaacaacaacagcagcagcaacatctGCATCCACACCAACAACATTTAATGCAACATCAATCGCTCAAAGTAAAACCCCAAATTCATATGATGCCAACAAACGCCCATGACTCCATCTCACCAGGTCATGCCCACGTGGCAACAGCAACACACACAGCTTCACAACATCCACTGGGACCGTCACAAGATACAAGGCCCTCTGTCATAGAATCGAATCAACCAATGATTATAGAATGTACGTAA
Protein Sequence: MNVTTHSQKQSETTTQQSDTTLNVPTTTSNSSNSNNNSSPVIEIIEQKHNTSVMNPTTVQIARSPSPDGSCDYDVTRMREEDFERLAVYIVPDVQCERGIANRADKTLPRSLTLKPSLVFLSPNVKTEGVWSTGVIPRGTRFGPFEGVPTPHYPNDTNTARYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLDTMNLVACQHQENIYFYTTRDIMPNEELMVWYCKDFAKRLGYDVDPERTLFGACKEVTDEDEEPDAETELGRQEQEVEYTCRKKRTCSSYSMPAPEIPPEVAYNHITYVMGLHLPPPASSTTHNERRSPTPSPSPPAVNQTQTTHPHIHHSHSSQHTRTLIRQSTLHQPHQNVLHLKQEPPSVIVQDHHCALDQECANRCHKDVGHSPNLQKEAQYEHQLTPNDGSVRSVRSDEGYHSNEYHEDRLTPSGGDDSDTESEHNYVLDCSKKAIAPKETVIAHAQKPCSSTVAIAPVAMAAATTGECCKNEYRKFKVKMPLKYEFKNSIKTEATNATTTISNTTTSPIKHEDHHISATSSEDDHRSSCTSSTQIDEPMDVDCRSSRAANPESTGTTTQPASSTVIVLEQSQKRTIVPLTKQYYEAESSSPPPMAQSYIRYTPPSSILETILTGQHQHRLETAAAAAAVAVACRQANSATPPPSSPTEMAYSYKKSQRYGNAVSPDSSSNMVADHNLHDNDDELHLNSTSYKKDIGSPPPPPHQQHQHQHHHVLFSPSGVPGAYVNDGQHTPPYSNYSSYSNSSVNGQSVSVLHAPTSTFHSPPHSAQSPFDRQSHSSSGSNQNLHLLQGSTQMLNHPLMQPLTPLHRLSPLRISPPSSLSPDGNSCSRSGSPPLSPNSMAARGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDHPEPDSREAFEQIQQHIHPHMRHMNGSAAEHMTAPRVMGHPSIQPHSHMQQQHVPMLHSHLPPPSSTAANMLLTTANQLHHHQHQHQQQQQLQQQQQQQQQQQQQQQHLHPHQQHLMQHQSLKVKPQIHMMPTNAHDSISPGHAHVATATHTASQHPLGPSQDTRPSVIESNQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045637;
90% Identity: -
80% Identity: -