Basic Information

Insect: Aldrichina grahami
Gene Symbol: -
Assembly: None
Location: Contig14:4431797-4434760[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00019 0.0077 16.2 1.1 2 23 112 134 111 134 0.94

2 15 1.5 63 3.9 6.7 1 23 140 163 140 163 0.97

3 15 8.1e-06 0.00033 20.5 1.0 2 23 171 192 170 192 0.97

4 15 0.00086 0.035 14.1 1.9 2 23 234 256 233 256 0.94

5 15 0.014 0.56 10.3 3.5 1 23 262 285 262 285 0.97

6 15 1.7e-05 0.00069 19.5 1.4 3 23 294 314 292 314 0.97

7 15 1.1e-06 4.7e-05 23.1 4.6 1 23 320 342 320 342 0.99

8 15 6.2e-07 2.5e-05 24.0 2.2 1 23 436 458 436 458 0.99

9 15 0.0019 0.078 13.0 0.6 1 23 567 591 567 591 0.91

10 15 1.6e-05 0.00064 19.6 1.5 1 23 596 618 596 618 0.98

11 15 7.6e-06 0.00031 20.5 2.5 1 23 624 647 624 647 0.97

12 15 0.016 0.64 10.1 1.9 1 23 656 678 656 678 0.97

13 15 6.8e-06 0.00028 20.7 1.2 1 23 684 706 684 706 0.98

14 15 8.4e-05 0.0034 17.3 0.3 2 23 713 734 712 734 0.96

15 15 1.7e-06 6.8e-05 22.6 3.9 1 23 740 762 740 762 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00019	0.0077	16.2	1.1	2	23	112	134	111	134	0.94
2	15	1.5	63	3.9	6.7	1	23	140	163	140	163	0.97
3	15	8.1e-06	0.00033	20.5	1.0	2	23	171	192	170	192	0.97
4	15	0.00086	0.035	14.1	1.9	2	23	234	256	233	256	0.94
5	15	0.014	0.56	10.3	3.5	1	23	262	285	262	285	0.97
6	15	1.7e-05	0.00069	19.5	1.4	3	23	294	314	292	314	0.97
7	15	1.1e-06	4.7e-05	23.1	4.6	1	23	320	342	320	342	0.99
8	15	6.2e-07	2.5e-05	24.0	2.2	1	23	436	458	436	458	0.99
9	15	0.0019	0.078	13.0	0.6	1	23	567	591	567	591	0.91
10	15	1.6e-05	0.00064	19.6	1.5	1	23	596	618	596	618	0.98
11	15	7.6e-06	0.00031	20.5	2.5	1	23	624	647	624	647	0.97
12	15	0.016	0.64	10.1	1.9	1	23	656	678	656	678	0.97
13	15	6.8e-06	0.00028	20.7	1.2	1	23	684	706	684	706	0.98
14	15	8.4e-05	0.0034	17.3	0.3	2	23	713	734	712	734	0.96
15	15	1.7e-06	6.8e-05	22.6	3.9	1	23	740	762	740	762	0.95

Sequence Information

Coding Sequence: ATGTCTCACAAATTAAATTCTAAGAAAAGTCGGACAGACACCAAACAGCATAAACGTATACATAATAAGGAAATAAATAACATTAATATATCGGCTATAGGATTTAACGATAATTCAAGAGCCCCAAATTATTGTAATGTGAAAAATGAATTAATAGACTGTTCAGAAGATCCACATCTAAAAGGAGACAAATTCATTAAAGAGGAACCAGATTGTGTCATTAATAATGAACAATCAGTTGATGAAGATAACTGGGATAATAATGAAGACGTTGGAAATAATACAGAGAAAACCTCCAGAATTTATAGGAGAAAAGTTTACCCTATTGAAAACAAATGTGTCATATGTAACAAGAAATTTTCTTTTCAAAGAGATCTTGTGAGACATGTGTTACAAAATCATCCTAATGGAAAAGCATTTAAATGTCAAAGTTGTTCAACTTTATTTTCAAAATTAAAATCCCTATCTACTCATTTCAAAAGATGTCATGCCAACTTGGCAAAAACCATTCCTTGTGAGTATTGCAACAAGTCATTTTTTGCCCAGTTTCAATTGGAACGTCACAGACGAACGCATACAGAACATAACGATTTGGCGTCTTTGCACGTTGAAAATGGCGAAGAACCTGGAAATAACAACATGGAAATAGATGAAGATATCTTCGGAAATCGAAAGGGAAAAATTTATCCAATTGAAAATAAATGTGCTATTTGTAATAAGAAATTTTCATTTCAAAAAGAGCTTGTTAATCATTCCAAACAAACTCATCCCAATGATAAAACATTTAAATGTCTATATTGTTCAACGGTATTTTCAAAATTGAAATCTGTGACTACGCATTTCAAAAGAAGTCATTCGAAATCGAGAAAGACCATTTTTTGCGAGTATTGTGGCATGTCATTTTTTACCAGGTTTCTATTGGAACGTCACAGACGATCACATACAGAACTTCGACCGTATTCATGCAATCAATGTGATAAAGCATACAAATATAAAAGGAATTTGTGTGTACACATGAGAACCCACTCGAATGATGATAAATCTTATAATAATAGTATAGAAGAGGATGATGAACAAAATCTTTCTGAGATTCGATTTATGGGAGATGAGTACTATGAGAATGATGATCAAAATATGTTCGCAGGGGATGAGTATTACGAGAATGATGATCAAAATCCAGTAACAGGAGACGAGTATTGGGAGCATGATGATCAAATTATTTTAGAAGATGATGAGGAAGAAAGTATTGATATGGGAAATCTTGCGACTGCTGGAAAAAATATGAATAATATGTTACAGTATCCCTTCAAGTGTAATGAATGCGACAGAGTTTACACGAATAAAAATAATCTAAATATCCATAAAAAAACTCATCAGAAAAATAATGAACTAACAGAGATCATAACTCTTGATGATGCCACAACAAGTGATCATGACAACTCCAATATTTACCAAAATACCTTTTTTATTATAGATGAGTTTAATACCGATTCGGAACACTGCGAAGATTTAGAAGAGGAAGAGGAATTTCCAGTAGCACATTACTCAAATGAGTTTGAATTTGTTCCCGCAAATTCAATTTCTACGGCAAATTCAGCAGACAACGAACAAAACGAATGTGGTGTTTGTATGAAAGTATTTAAATGCCAGCAATCAGTAGCCAAGCATGTGCAACGTTGTCATCCAGAAATTGAGTTCTTTAAATGTCCTTACTGTGATGATAATTTCTATAGCCTAGACTCGCTATCGCTGCATATAAATGTTAAGAAACATTTGCAAAAACGATTTGTTTGTGAACACTGTCTAAAGTCTTTTGATCGCATGACCGATTTGAGACGTCACATACTAATACATACTGATGAGCGTCCTTTTTCGTGCAATGTATGTCAAAAAACCTTTAAACAAATTAATAATTTAAAACGCCACAAAGAAACAATGCACGATAACAAGTTTAAACCAACAAAATTTAGTTGTAAGTTTTGTCCAAAAAGTTTTTTACATGCCGACATACTGAAACGTCATTTGAGTATACATGACAAAAAAAGTGATTATCCCTGTTCCATGTGCAATAAAATATTCAAAAGCAGATATGACTGGCAGAGGCATGAACAAACTCATAGTTCAAGAAAAGATCTAATATGCGATTATTGCTTGAAATCCTTTGATAACATCGAAACTTTAAATCGTCATCTGAAGGTTCATACGGGCGAATTCAAATTTTTGTGTACAATTTGTAACAAAACTTTCAGACGGAAGAGTCATTTAATTAATCATGCTAAGAGCCACAGAAATTGGTAA
Protein Sequence: MSHKLNSKKSRTDTKQHKRIHNKEINNINISAIGFNDNSRAPNYCNVKNELIDCSEDPHLKGDKFIKEEPDCVINNEQSVDEDNWDNNEDVGNNTEKTSRIYRRKVYPIENKCVICNKKFSFQRDLVRHVLQNHPNGKAFKCQSCSTLFSKLKSLSTHFKRCHANLAKTIPCEYCNKSFFAQFQLERHRRTHTEHNDLASLHVENGEEPGNNNMEIDEDIFGNRKGKIYPIENKCAICNKKFSFQKELVNHSKQTHPNDKTFKCLYCSTVFSKLKSVTTHFKRSHSKSRKTIFCEYCGMSFFTRFLLERHRRSHTELRPYSCNQCDKAYKYKRNLCVHMRTHSNDDKSYNNSIEEDDEQNLSEIRFMGDEYYENDDQNMFAGDEYYENDDQNPVTGDEYWEHDDQIILEDDEEESIDMGNLATAGKNMNNMLQYPFKCNECDRVYTNKNNLNIHKKTHQKNNELTEIITLDDATTSDHDNSNIYQNTFFIIDEFNTDSEHCEDLEEEEEFPVAHYSNEFEFVPANSISTANSADNEQNECGVCMKVFKCQQSVAKHVQRCHPEIEFFKCPYCDDNFYSLDSLSLHINVKKHLQKRFVCEHCLKSFDRMTDLRRHILIHTDERPFSCNVCQKTFKQINNLKRHKETMHDNKFKPTKFSCKFCPKSFLHADILKRHLSIHDKKSDYPCSMCNKIFKSRYDWQRHEQTHSSRKDLICDYCLKSFDNIETLNRHLKVHTGEFKFLCTICNKTFRRKSHLINHAKSHRNW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259947; iTF_00259080;
90% Identity: iTF_00259947; iTF_00259080;
80% Identity: -