Cvom006308.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000135.1:639332-641772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00026 0.013 16.1 1.1 2 23 111 133 110 133 0.94 2 15 2.1 1e+02 3.8 6.7 1 23 139 162 139 162 0.97 3 15 1.1e-05 0.00055 20.5 1.0 2 23 170 191 169 191 0.97 4 15 0.0012 0.058 14.1 1.9 2 23 233 255 232 255 0.94 5 15 0.019 0.94 10.3 3.5 1 23 261 284 261 284 0.97 6 15 2.3e-05 0.0012 19.4 1.4 3 23 293 313 291 313 0.97 7 15 1.6e-06 7.8e-05 23.1 4.6 1 23 319 341 319 341 0.99 8 15 1.2e-05 0.00061 20.3 5.9 1 23 439 461 439 461 0.99 9 15 0.0026 0.13 13.0 0.6 1 23 570 594 570 594 0.91 10 15 6.9e-05 0.0034 18.0 1.5 1 23 599 621 599 621 0.97 11 15 1.3e-05 0.00065 20.2 1.6 1 23 627 650 627 650 0.97 12 15 0.017 0.85 10.4 0.9 1 23 660 682 660 682 0.96 13 15 1.3e-05 0.00064 20.2 1.3 1 23 688 710 688 710 0.98 14 15 2.8e-05 0.0014 19.2 0.3 2 23 717 738 716 738 0.96 15 15 1.6e-06 7.8e-05 23.1 3.2 1 23 744 766 744 766 0.95
Sequence Information
- Coding Sequence
- ATGTCTCACAAATTAAATTCTAAGAAAAGTCGAACAGATACCAAACAGTATAAACGTATACATAATAAGGAAATAAAAAACATAACTAAATCGGCTATAGGATTTAACGATAAGTCAAATTATTGTAATGTGAAAAATGAATTAATAGACTGTTCAGAAGATACACATCAAAAAGGAGACAAATTCATTAAAGAGGAACCAGATTGTGTCATTAATAATGAGCATTCAATTGATGAAGATGAAGTTAACTGGGATAATAATGAAGACGTTGGAAAAAATACAGAGAAAACCTCTAGAATTTATAAGAGAAAAATTTATCCTATTGAAAACAAATGTGTCATATGTAACAAGAAATTTTCTTTTCAAAGAGATCTTGTGAGGCATGTGTTACAAAATCATCCTAATGGAAAAGCATTTAAATGTCAAAGTTGTTCAACATTATTTTCAAAATTAAAATCCCTATCTACTCACTTCAAAAGATGTCATGCCAACTTGGCAAAGACCATTCCTTGTGAGTATTGTAACAAGTCATTTTTTGCCCAGTTTCAATTGGAACGTCACAGACGAACTCATACAGAACATTACGATTTGCCGTCTTCGCACGTTGAAAATGGCGAAGAACCTGGAAATAACATAATGGATATAGATGAAGATATCTTCGGAAATCGAAAGGGAAAAATTTATCCAATCGAAAACAAATGTGCTATTTGTAATAAGAAATTTTCTTTTCAAAAAGAGCTGGTTAATCATTCCAAACAAACACATCCCAATGATAAAACATTTAAATGTCTATATTGTTCAACGGTATTTTCAAAATTAAAATCAGTGACTACGCATTTCAAAAGAAGTCATTCCAAATCGAGAAAGACCATTTTTTGTGAGTATTGTGGCATGTCATTTTTTACCAGGTTCCTATTGGAACGTCACAGACGATCACATACAGAAATGCGACCATATTCATGCAATCAATGTGATAAAGCATACAAATATAAAAGGAATTTGTGTGTACACATGAGAACCCACTCGAATGATGATAAAACTTATAATAATAGTATAGAAGAGGATCATGAAGAGGATGATGATCAAAATCTTTCTGAGATTCGTTTTATGGGAGATGAGTATTATGAGAATGATGATGAAAATATGTTCGCAGGGGATGAGTATTACGAGAATGATGAACAAAATCCAGTAACCGGGGATGAGTGTTGGGATCACGATGATCAAATTATTTTAGAAGATGATGAGGAAGAATGTATTGATATGGCAAATCTTGCGACTGCTGGAAAAAATATGAATAATATGTTACAGTATCCCTTCAAGTGTAATGAATGCGACAGAGTTTACAAGTATAAACATAATCTAAATACACATAAAAAAACTCATCAGAAAAATAATGAACTAACAGAGATAATAACTCTTGATGATGCCACAACAACTGATCATGACAACTCCAACATTTACCAAAATACCTTTTTTATTATAGATGAGTTTAATACAGATTCGGAACACTGCGAAGATTTAGATGAGGAAGAACAATTTCCAGCAGCACCTTACGCAAATGAGTTTGAATTTGTTCCCGCAAATTCAATTTGTATGACAAATTCAGCGGACAACGAACAAAACGAATGTGGTGTTTGTATGAAATTATTTAAATGCCAGCAATCAGTAGCCAAACATGTGCAACGTTGTCATCCCGAAATCGAATTCTTTAAATGTCCATACTGTGATGATAATTTCTATAGCCTAGACTCGCTATCGCTGCATATAAATGTAAAGAAACATTTGCAAAAACGATTTGTTTGTGAACACTGTCTAAAGTCTTTTGATCGCATGACCGATTTGAGACGTCACGTACTAATACATACTGATGAGCGTCCTTTTTCGTGCAATGTATGTCAAAAAGCCTTTAAACAAATTAATAATTTAAAACGCCACAAAGAAACAATGCACGCTAACGATAAGTTTAAACCAACAAAATTTAGTTGTAAGTTTTGTCCGAAAAGTTTTTTAAATGATGACATACTGAAACGTCATATGAGTATACATGACAAAAAAAGTGATTTTCCGTGTTCCATGTGCAATAAAATATTCAAGAGCAGATATGACTGGCAGAGGCATGAACAAACTCATAGTTCAAGAAAAGATCTAATATGCGATTACTGCTTGAAATCCTTTGATAACATCGAAAATCTAAATCGTCATCTGAAGGTTCATACGGGCGAATTCAAATTTTTGTGTACAATTTGTAACAAAACTTTTAGACGGAAGAGTCATTTAATTAATCATGCTAAGATCCACAGAAAATGGTAA
- Protein Sequence
- MSHKLNSKKSRTDTKQYKRIHNKEIKNITKSAIGFNDKSNYCNVKNELIDCSEDTHQKGDKFIKEEPDCVINNEHSIDEDEVNWDNNEDVGKNTEKTSRIYKRKIYPIENKCVICNKKFSFQRDLVRHVLQNHPNGKAFKCQSCSTLFSKLKSLSTHFKRCHANLAKTIPCEYCNKSFFAQFQLERHRRTHTEHYDLPSSHVENGEEPGNNIMDIDEDIFGNRKGKIYPIENKCAICNKKFSFQKELVNHSKQTHPNDKTFKCLYCSTVFSKLKSVTTHFKRSHSKSRKTIFCEYCGMSFFTRFLLERHRRSHTEMRPYSCNQCDKAYKYKRNLCVHMRTHSNDDKTYNNSIEEDHEEDDDQNLSEIRFMGDEYYENDDENMFAGDEYYENDEQNPVTGDECWDHDDQIILEDDEEECIDMANLATAGKNMNNMLQYPFKCNECDRVYKYKHNLNTHKKTHQKNNELTEIITLDDATTTDHDNSNIYQNTFFIIDEFNTDSEHCEDLDEEEQFPAAPYANEFEFVPANSICMTNSADNEQNECGVCMKLFKCQQSVAKHVQRCHPEIEFFKCPYCDDNFYSLDSLSLHINVKKHLQKRFVCEHCLKSFDRMTDLRRHVLIHTDERPFSCNVCQKAFKQINNLKRHKETMHANDKFKPTKFSCKFCPKSFLNDDILKRHMSIHDKKSDFPCSMCNKIFKSRYDWQRHEQTHSSRKDLICDYCLKSFDNIENLNRHLKVHTGEFKFLCTICNKTFRRKSHLINHAKIHRKW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045480;
- 90% Identity
- iTF_00045480;
- 80% Identity
- -