Basic Information

Insect: Alcis repandata
Gene Symbol: -
Assembly: GCA_949125135.1
Location: OX421230.1:4540111-4558619[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 3.2e-05 0.0025 18.8 1.4 1 23 417 439 417 439 0.96

2 20 0.0025 0.2 12.8 0.9 1 20 445 464 445 467 0.94

3 20 2.2e-05 0.0018 19.3 5.6 1 23 486 508 486 508 0.98

4 20 0.0001 0.0082 17.2 4.1 1 23 514 536 514 536 0.99

5 20 3.9e-05 0.0031 18.5 5.3 1 23 542 564 542 564 0.97

6 20 1.2e-06 9.3e-05 23.3 5.9 1 23 570 592 570 592 0.98

7 20 5.6e-07 4.5e-05 24.3 3.1 1 23 598 620 598 620 0.98

8 20 0.00011 0.0086 17.1 6.7 1 23 626 648 626 648 0.97

9 20 0.00011 0.0085 17.1 6.5 1 23 654 676 654 676 0.97

10 20 5.2e-07 4.1e-05 24.4 1.9 1 23 682 704 682 704 0.98

11 20 5.3e-05 0.0042 18.1 7.9 1 23 710 732 710 732 0.98

12 20 2.7e-05 0.0021 19.0 6.6 1 23 738 760 738 760 0.98

13 20 4.8e-06 0.00038 21.4 5.2 1 23 766 788 766 788 0.98

14 20 8.8e-06 0.0007 20.6 5.0 1 23 794 816 794 816 0.96

15 20 2.3e-06 0.00018 22.4 5.0 1 23 822 844 822 844 0.98

16 20 3.2e-06 0.00026 21.9 6.0 1 23 850 872 850 872 0.98

17 20 6.3e-05 0.005 17.9 7.9 1 23 878 900 878 900 0.97

18 20 3.6e-06 0.00028 21.8 5.2 1 23 906 928 906 928 0.98

19 20 0.00035 0.028 15.5 0.3 1 23 935 957 935 957 0.97

20 20 0.028 2.2 9.5 5.6 1 23 966 988 966 988 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	3.2e-05	0.0025	18.8	1.4	1	23	417	439	417	439	0.96
2	20	0.0025	0.2	12.8	0.9	1	20	445	464	445	467	0.94
3	20	2.2e-05	0.0018	19.3	5.6	1	23	486	508	486	508	0.98
4	20	0.0001	0.0082	17.2	4.1	1	23	514	536	514	536	0.99
5	20	3.9e-05	0.0031	18.5	5.3	1	23	542	564	542	564	0.97
6	20	1.2e-06	9.3e-05	23.3	5.9	1	23	570	592	570	592	0.98
7	20	5.6e-07	4.5e-05	24.3	3.1	1	23	598	620	598	620	0.98
8	20	0.00011	0.0086	17.1	6.7	1	23	626	648	626	648	0.97
9	20	0.00011	0.0085	17.1	6.5	1	23	654	676	654	676	0.97
10	20	5.2e-07	4.1e-05	24.4	1.9	1	23	682	704	682	704	0.98
11	20	5.3e-05	0.0042	18.1	7.9	1	23	710	732	710	732	0.98
12	20	2.7e-05	0.0021	19.0	6.6	1	23	738	760	738	760	0.98
13	20	4.8e-06	0.00038	21.4	5.2	1	23	766	788	766	788	0.98
14	20	8.8e-06	0.0007	20.6	5.0	1	23	794	816	794	816	0.96
15	20	2.3e-06	0.00018	22.4	5.0	1	23	822	844	822	844	0.98
16	20	3.2e-06	0.00026	21.9	6.0	1	23	850	872	850	872	0.98
17	20	6.3e-05	0.005	17.9	7.9	1	23	878	900	878	900	0.97
18	20	3.6e-06	0.00028	21.8	5.2	1	23	906	928	906	928	0.98
19	20	0.00035	0.028	15.5	0.3	1	23	935	957	935	957	0.97
20	20	0.028	2.2	9.5	5.6	1	23	966	988	966	988	0.99

Sequence Information

Coding Sequence: ATGAATCCGGAACACCACAATATTAACCCGGGTGGTGGTCAGCCCCCTGGGAGTTCAGAGTCCCAAGGGCAGAGAGTGCAGGCTGCACAACAGCAGCAGCAGGGAAGCTTGCCTGCTACAACATCTGCCACGGATTTACGAGTGAATACAGCAGCTGTAAATGTGGCTTTGTCCAGCGTAGCAAAGTATTGGGTATTTACGAACTTATTCCCTGGACCAATTCCACAAGTCTCTGTGTATGGACTACCCACTGGAACTAGAATTGAAAACGGAAAACCTGTACAGGACATTGGTCAACATGCAAGCATACTTAACGGTGACCCCAACATCATACTGGGCCATCATGGTGGACAGTCACAGGTTACTGTTTCCGCGGGTAATCAACAAATACCTGTATCACAAATCATTGCCACACAATCAGGGCAGACACATGAAGCGCTGGTTGCACACAGCCAGGAGCTGGTGCAGGCCGGGGCAGGGGCCCAGGTTTCGGTCGGCAGCCAGCCAACCCACCAGCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAACATTGATATGGGTCATCACTCACAACAACACATTCTGCAGCAGCAGCTAATGACGGCGCGCCCTGACCACACCAACCAACAGATCCAGCTGACGGTCAGTGAAGATGGTATCGTGACGGTCGTCGAGCCTGGCAATAGTAAGATGGTGGACAAAGAAGATCTGCATGAGACTATCAAACTACCGTCCGACCATCCCTTAACCATCCACCAGTTGCAGCAGATTGTGGGTCAACAGCTCGGTACACAAGTACTagaaaacgtggtccgaattgAGCAAGCTACAGGCGAGCCGGCCAATATTCTCGTCACACACAATGCGGACGGAACCACTTCTATTGAAGCGAGCGCCTCAGACCCTCTCTCCAACGTGAAAGATGAGAAAAATCAAGGAAAGATGGAGACGGCACAGTTTGCTATACCTGCGGAGATAAAGGACATCAAAGGCCTCGATTTAAAAAGTGTAGGAGCGATGGGTATGGAAGGTGCAGTCGTGAAGATATCCACCGGAGCGGATAACGACATGACGGCTATGTACAAAGTCAATGTGGAAGACCTTTCGCAGTTGTTGGCGTATCACGAAGTTTTCGGGAAACTGAATACTGATGGCCAGTCGCAAAACAAAcAGGGTGAAATAGAAATCGAAGTACCGGGCCCTAGCCAGATGTCAGAAGCAGAGTCGTCACCCGGCCACCATGCCTGTGATATCTGCGGGAAAGTCTTCCAGTTCCGATATCAACTTATAGTTCACAGACGGTACCACGGCGAAAGCAAACCCTACAGTTGCCAAGTCTGCGGCTCGTCGTTCGCCAACCCGGTCGAATTATCGCGACACGGAAAATGCCATCTTGCCGGAGATCCAGTGGAGAGACACGCGAAGAGGATGGCCCAGGACAAACCCTATGCCTGCACAACTTGCCATAAAACTTTCTCACGTAAAGAACATCTAGACAACCATGTACGGAGTCACACTGGAGAAACACCCTACAGATGTGAGTTCTGCGCGAAGACGTTCACCCGCAAGGAGCATATGGTGAATCATGTGCGCAAGCACACGGGAGAGACGCCGCACCGCTGCGACATTTGCAAAAAGAGCTTTACACGGAAGGAGCACTTTATGAACCATGTCATGTGGCATACAGGTGAAACGCCACATCAGTGCCAAATTTGTGGCAAGAAGTATACTAGAAAGGAGCATCTGTCGAACCATATGCGATCTCATACGAACGACACGCCGTTCAGGTGTGACCTGTGCGGCAAATCTTTTACAAGAAAGGAACATTTCACAAATCACATTATGTGGCATACTGGCGAAACCCCCCACCGCTGCGACTTCTGTTCTAAAACCTTCACCCGAAAAGAGCACCTGCTAAACCACGTCCGTCAGCACACGGGCGAGTCCCCTCACCGCTGCAACTTCTGTTCAAAGTCGTTCACGCGGCGCGAACACCTCGTGAACCACGTGCGACAACACACTGGGGAGACGCCCTTTCAGTGCGGATACTGCCCGAAAGCGTTCACTAGGAAAGATCATCTCGTGAACCACGTCCGGCAGCACACGGGCGAGTCCCCGCACAAGTGCTCGTTCTGCACGAAGTCGTTCACCCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCACGTACTGCGCGAAGAGCTTCACGAGGAAGGAGCATCTCACCAACCACGTCAGACAGCACACGGGCGAAACGCCACACAAGTGCACGTACTGCCCGCGCGCGTTCTCGCGCAAGGAGCACCTCAACAACCACGTGAGGCAGCACACGGGGGTCACGCCGCACGCCTGCTCCTATTGCAACAAGAGCTTCACGAGGAAGGAGCATCTCGTCAACCATGTCAGGCAACACACGGGCGAAACTCCGTTCAAGTGCACGTATTGTTCGAAGTCGTTCTCTCGCAAGGAGCACCTCACCAACCACGTGAACCTGCACACGGGCGAGACGCCGCACAAGTGCCCCTTCTGCACAAAGACATTCTCCAGGAAGGAACACCTCACCAATCACGTCAGAATCCACACCGGCGAGTCCCCCCATCGCTGCGACTTCTGCCAGAAAACATTCACCCGCAAGGAACACCTCACGAATCATCTAAAGCAGCACACGGGCGATGCCGCACACACCTGCAAGGTCTGCTCTAAGCCTTTCACGAGGAAGGAGCATTTGGTCACTCATATGAGATCTCACAGCTGCGGCGAGAAGCCGTACAGTTGCGGCGAGTGCGGAAAGTCTTTCCCTCTAAAAGGGAACCTCATGTTCCACGAGCGCTCGCACCAGaagggcggcggcgcgcgccccTTCCGCTGTGATGTGTGCTCGAAGGACTTCATGTGCAAAGGGCACCTGATCACGCACCGACGCACGCACGCGGACGCGGGCGCGGAGCCCGAGGCGGAGGCGCGGCCCGCCGCCGACGAGTGCAGCGCCAAGTGCGTCAAGGTGGAGGCCGAGCCTAGCGAGCCGGAGTGCAAGCCCAAAATTGAAGAAGTGTGGTCACTTACTGAAAATCTCATAGTACCACATCCAGAGACCTCGCCAACCAACGCTGCTGTGATGCAGATAACAAACCAACAACCCCGCTCCGTGACCGGCTCTCCCGGCATCCCAGCAACGTTCACGCACACGGAGTCCGCGCAGCACCACGCCGGCGCGGCGATCGCCCACCACCCCGTCAGTGTGACCTACTAG
Protein Sequence: MNPEHHNINPGGGQPPGSSESQGQRVQAAQQQQQGSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDIGQHASILNGDPNIILGHHGGQSQVTVSAGNQQIPVSQIIATQSGQTHEALVAHSQELVQAGAGAQVSVGSQPTHQQVPNNRVEFVQHHNIDMGHHSQQHILQQQLMTARPDHTNQQIQLTVSEDGIVTVVEPGNSKMVDKEDLHETIKLPSDHPLTIHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLSNVKDEKNQGKMETAQFAIPAEIKDIKGLDLKSVGAMGMEGAVVKISTGADNDMTAMYKVNVEDLSQLLAYHEVFGKLNTDGQSQNKQGEIEIEVPGPSQMSEAESSPGHHACDICGKVFQFRYQLIVHRRYHGESKPYSCQVCGSSFANPVELSRHGKCHLAGDPVERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQICGKKYTRKEHLSNHMRSHTNDTPFRCDLCGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGVTPHACSYCNKSFTRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDAAHTCKVCSKPFTRKEHLVTHMRSHSCGEKPYSCGECGKSFPLKGNLMFHERSHQKGGGARPFRCDVCSKDFMCKGHLITHRRTHADAGAEPEAEARPAADECSAKCVKVEAEPSEPECKPKIEEVWSLTENLIVPHPETSPTNAAVMQITNQQPRSVTGSPGIPATFTHTESAQHHAGAAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704247;
90% Identity: iTF_00143231;
80% Identity: iTF_00044698;