Aips025521.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- Zfy1
- Assembly
- GCA_028554685.1
- Location
- CM052983.1:2020364-2045965[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.7 2.5e+04 -4.1 0.0 49 59 58 68 57 75 0.74 2 9 4.5 2e+04 -3.8 0.0 39 63 81 105 81 110 0.68 3 9 0.002 9 7.0 0.0 36 68 252 283 250 290 0.83 4 9 0.013 60 4.3 0.0 36 54 291 309 287 314 0.85 5 9 0.002 8.9 7.0 0.0 36 68 317 348 315 355 0.83 6 9 0.0018 8 7.1 0.0 36 68 356 387 352 394 0.83 7 9 0.0019 8.6 7.0 0.0 36 68 395 426 393 434 0.83 8 9 0.0019 8.4 7.1 0.0 36 68 434 465 432 474 0.83 9 9 0.019 86 3.8 0.0 36 51 473 488 471 502 0.84
Sequence Information
- Coding Sequence
- ATGAAGGAGAAAACAAAGAAGAAAGGAGCcaaaccaaaaaaacaaaagaatgtgtATCCATGTAAATTTTGTCATAAgTCCTTCGAAAACTCTTCAAACTGGCTCTCCCACGTGAAACTCCACTCCACGGAGCTTCCGTACAACTGCCACCTCTGTGACTACAAGTGCAAAGTTAAAAAGTACCTTACAAGGCATATCAATAAGACTCATTCTAAACCAACCGGCCATCAGTGTGGCATATGTGGGAAATGCTTCCATTTTGATAGCGCGCTCCGGAATCATATGAGAGTGCATACAGgtgaAAAACCATACAAGTGTAACCAATGTGACAAGGCGTTTAGTTCATCATACTCTTTGAACGGACACAAGTTAATACATACTGgcGAGAAACCATTCCAATGTCGTTACTGCGACTATGCTTGTCGAGACAGCTCCACGGTAAGGAGGCATATGGAGAGGCATCTAGGAATATCTAAGACATACCCGTGCTCCGTATGTAATAAGAATTTCAAAAAGAAGATGTCACTACAAGTACATATAGACGAAGTACATTTTGATCTGGACACGAGGAAGTATCCCTGTGAGCAGTGTGACAAGATGTTCAAAACTAAGAGGACACTTAGCTCTCATGTTATCGCAGTCCACGACAAGTCAAATCGCGTCAAGTGCGAGATCTGTGGTCTCGTCGTTACTAAAAACAATCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCAAATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATAtgGGTGATTTAAAACGCCATCAATTAATCCACTACCCGGATTACCAACATATTTGTACAGTGTGTAACAGACGGTTCCCTCGCAAGTGGAGGCTCAAGAAACATACCTTGAATGGATGTCAAAGAGTGCAGTGTCATGACTGTGGACAGCTATTTACAGCAAAGAAATTCCTCGCTCAGCACATAAAGAACGCTCACGGTCCTTATCCGAAATCCAGAGAGTATCTCTGCGATGTTTGTGACATGGTCACTTACAGTAGGCGAGGGATCATACAACACTTGAAGTATGGACATGGAACTGAAAAGgaCACAATATGCCAAATATGTAGAAAGGATTATTTCAAATGTCTAACTTTGAAGGAACATTATTTAAGTCATCATAACTTTATTTACACTTTGATGGATCAAAAgaaagatgatttaattgaaataaaagaggAACCTTTAGAAGAAATGGAACACGTAGCTGACCCCGCGGAATTTATATATGAAGTTGATATACAGAAAACTGAAATTGATGaaaTACCTTCAGATCCACCATTACAACTCCAGCCGCCGTCCCCTCAACACTTCCTAATAGATTCAGATTCCATCACATACTCTAAGAAGGTGTTATCAGAGGATATATCTCGCAGTTTAATAGATAAGGGTGGAGTGACTGATGTCTTCCACGAGTTGTTTATAGGACATGCTTTGGATATTAGCGGGGCTCCAATAGTGACCAAGTTACCAAAACAAATAGTTGACGAAGAGAAAGAAAAGCACGTCGAGCAACGTCTAGAAAAACTTCTAACTGAAGTGCGTATGCGCAACCAATGGGTAGTTTTGGAGAAATTGCGCAGACAATATAATAGACGGATCAAAATGGCTACCAGTGGTGGAGAGAAGAAAGCTCTTCACAACAAAATCAGACTTGAAGTTCCACTGCAAGGAACACTTCGACATATGCAACGATAA
- Protein Sequence
- MKEKTKKKGAKPKKQKNVYPCKFCHKSFENSSNWLSHVKLHSTELPYNCHLCDYKCKVKKYLTRHINKTHSKPTGHQCGICGKCFHFDSALRNHMRVHTGEKPYKCNQCDKAFSSSYSLNGHKLIHTGEKPFQCRYCDYACRDSSTVRRHMERHLGISKTYPCSVCNKNFKKKMSLQVHIDEVHFDLDTRKYPCEQCDKMFKTKRTLSSHVIAVHDKSNRVKCEICGLVVTKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSQMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMGDLKRHQLIHYPDYQHICTVCNRRFPRKWRLKKHTLNGCQRVQCHDCGQLFTAKKFLAQHIKNAHGPYPKSREYLCDVCDMVTYSRRGIIQHLKYGHGTEKDTICQICRKDYFKCLTLKEHYLSHHNFIYTLMDQKKDDLIEIKEEPLEEMEHVADPAEFIYEVDIQKTEIDEIPSDPPLQLQPPSPQHFLIDSDSITYSKKVLSEDISRSLIDKGGVTDVFHELFIGHALDISGAPIVTKLPKQIVDEEKEKHVEQRLEKLLTEVRMRNQWVVLEKLRRQYNRRIKMATSGGEKKALHNKIRLEVPLQGTLRHMQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042011;
- 90% Identity
- iTF_00042011;
- 80% Identity
- iTF_00042011;