Aips025521.1
Basic Information
- Insect
- Agrotis ipsilon
- Gene Symbol
- Zfy1
- Assembly
- GCA_028554685.1
- Location
- CM052983.1:2020364-2045965[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.7e-05 0.0047 18.2 2.6 1 23 19 41 19 41 0.97 2 18 0.0037 0.38 12.3 7.4 1 23 47 70 47 70 0.97 3 18 3.1e-05 0.0031 18.8 5.3 1 23 76 98 76 98 0.98 4 18 4.1e-06 0.00041 21.6 1.0 1 23 104 126 104 126 0.98 5 18 9.5e-05 0.0096 17.3 3.6 1 23 132 154 132 154 0.98 6 18 3.7e-05 0.0037 18.6 0.4 1 23 161 184 161 184 0.93 7 18 2.8e-05 0.0028 19.0 0.3 1 23 192 215 192 215 0.92 8 18 0.00011 0.011 17.1 0.3 2 23 222 242 221 242 0.98 9 18 0.84 85 4.9 1.3 11 23 269 281 265 281 0.85 10 18 0.0025 0.25 12.8 0.8 1 20 287 308 287 310 0.87 11 18 0.84 85 4.9 1.3 11 23 334 346 330 346 0.85 12 18 0.84 85 4.9 1.3 11 23 412 424 408 424 0.85 13 18 0.84 85 4.9 1.3 11 23 451 463 447 463 0.85 14 18 0.00019 0.019 16.4 0.8 1 23 469 493 469 493 0.90 15 18 0.0011 0.11 13.9 1.2 1 20 499 518 499 520 0.93 16 18 0.0014 0.14 13.6 0.8 2 23 526 548 525 548 0.96 17 18 0.25 25 6.5 0.1 1 23 557 580 557 580 0.94 18 18 3.6 3.7e+02 2.9 5.0 3 23 588 608 586 609 0.94
Sequence Information
- Coding Sequence
- ATGAAGGAGAAAACAAAGAAGAAAGGAGCcaaaccaaaaaaacaaaagaatgtgtATCCATGTAAATTTTGTCATAAgTCCTTCGAAAACTCTTCAAACTGGCTCTCCCACGTGAAACTCCACTCCACGGAGCTTCCGTACAACTGCCACCTCTGTGACTACAAGTGCAAAGTTAAAAAGTACCTTACAAGGCATATCAATAAGACTCATTCTAAACCAACCGGCCATCAGTGTGGCATATGTGGGAAATGCTTCCATTTTGATAGCGCGCTCCGGAATCATATGAGAGTGCATACAGgtgaAAAACCATACAAGTGTAACCAATGTGACAAGGCGTTTAGTTCATCATACTCTTTGAACGGACACAAGTTAATACATACTGgcGAGAAACCATTCCAATGTCGTTACTGCGACTATGCTTGTCGAGACAGCTCCACGGTAAGGAGGCATATGGAGAGGCATCTAGGAATATCTAAGACATACCCGTGCTCCGTATGTAATAAGAATTTCAAAAAGAAGATGTCACTACAAGTACATATAGACGAAGTACATTTTGATCTGGACACGAGGAAGTATCCCTGTGAGCAGTGTGACAAGATGTTCAAAACTAAGAGGACACTTAGCTCTCATGTTATCGCAGTCCACGACAAGTCAAATCGCGTCAAGTGCGAGATCTGTGGTCTCGTCGTTACTAAAAACAATCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCAAATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATATGGTGAGTCATGTGTCTGTTATAAGAACAAACAACCTCCAGTCTCATATGAGACGACACATTGATGTGAGACCTTACCGGTGTAGCTACAAGCCATGCGGGAAGAGATTCAAGGATAtgGGTGATTTAAAACGCCATCAATTAATCCACTACCCGGATTACCAACATATTTGTACAGTGTGTAACAGACGGTTCCCTCGCAAGTGGAGGCTCAAGAAACATACCTTGAATGGATGTCAAAGAGTGCAGTGTCATGACTGTGGACAGCTATTTACAGCAAAGAAATTCCTCGCTCAGCACATAAAGAACGCTCACGGTCCTTATCCGAAATCCAGAGAGTATCTCTGCGATGTTTGTGACATGGTCACTTACAGTAGGCGAGGGATCATACAACACTTGAAGTATGGACATGGAACTGAAAAGgaCACAATATGCCAAATATGTAGAAAGGATTATTTCAAATGTCTAACTTTGAAGGAACATTATTTAAGTCATCATAACTTTATTTACACTTTGATGGATCAAAAgaaagatgatttaattgaaataaaagaggAACCTTTAGAAGAAATGGAACACGTAGCTGACCCCGCGGAATTTATATATGAAGTTGATATACAGAAAACTGAAATTGATGaaaTACCTTCAGATCCACCATTACAACTCCAGCCGCCGTCCCCTCAACACTTCCTAATAGATTCAGATTCCATCACATACTCTAAGAAGGTGTTATCAGAGGATATATCTCGCAGTTTAATAGATAAGGGTGGAGTGACTGATGTCTTCCACGAGTTGTTTATAGGACATGCTTTGGATATTAGCGGGGCTCCAATAGTGACCAAGTTACCAAAACAAATAGTTGACGAAGAGAAAGAAAAGCACGTCGAGCAACGTCTAGAAAAACTTCTAACTGAAGTGCGTATGCGCAACCAATGGGTAGTTTTGGAGAAATTGCGCAGACAATATAATAGACGGATCAAAATGGCTACCAGTGGTGGAGAGAAGAAAGCTCTTCACAACAAAATCAGACTTGAAGTTCCACTGCAAGGAACACTTCGACATATGCAACGATAA
- Protein Sequence
- MKEKTKKKGAKPKKQKNVYPCKFCHKSFENSSNWLSHVKLHSTELPYNCHLCDYKCKVKKYLTRHINKTHSKPTGHQCGICGKCFHFDSALRNHMRVHTGEKPYKCNQCDKAFSSSYSLNGHKLIHTGEKPFQCRYCDYACRDSSTVRRHMERHLGISKTYPCSVCNKNFKKKMSLQVHIDEVHFDLDTRKYPCEQCDKMFKTKRTLSSHVIAVHDKSNRVKCEICGLVVTKNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSQMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMVSHVSVIRTNNLQSHMRRHIDVRPYRCSYKPCGKRFKDMGDLKRHQLIHYPDYQHICTVCNRRFPRKWRLKKHTLNGCQRVQCHDCGQLFTAKKFLAQHIKNAHGPYPKSREYLCDVCDMVTYSRRGIIQHLKYGHGTEKDTICQICRKDYFKCLTLKEHYLSHHNFIYTLMDQKKDDLIEIKEEPLEEMEHVADPAEFIYEVDIQKTEIDEIPSDPPLQLQPPSPQHFLIDSDSITYSKKVLSEDISRSLIDKGGVTDVFHELFIGHALDISGAPIVTKLPKQIVDEEKEKHVEQRLEKLLTEVRMRNQWVVLEKLRRQYNRRIKMATSGGEKKALHNKIRLEVPLQGTLRHMQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00041799;
- 90% Identity
- iTF_00041799;
- 80% Identity
- iTF_00041799;