Aips005336.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrotis ipsilon
Gene Symbol
Paxbp1
Assembly
GCA_028554685.1
Location
CM052958.1:16441730-16456641[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.5e-13 1.7e-08 35.4 0.0 3 188 520 684 518 693 0.76

Sequence Information

Coding Sequence
ATGTCGATGTTTCGGAAGCCGAAAAAGATTCAGCGTCGTGTGTTTTGTGCTGATGATGACGAAGATGGAGAGCCCGAGGCTCCGCCGCCGCCAGTCATCAGCCAAGAGAGGGAGAAGAAGGAGAAGTCTAGCAAGAAAACTGCTCTGTTGAGTTTCGCAGACGAAGAAGAAGAAGATGTGGAGGTGTTCAAAGTGAAAAAGTCTTCTCAAAGTAAGAGATTAGCAAAGAAACGGGAGAAAGAGAAACAGAAGCGTGATGTGAGAACCGATGGTGATAATAACAAATTTGACACTATCATTGTTGAGGACAAGATCAACGACACAGACAACAGCAACGACAAGCCGAAAGCAAAGAAGAAGGTGTCATTAGAGGGACTGATCCTGTCCGGGAGGGAAGCGCTAGCGGCCGACGGGGCGGGAGACGTGTCCGACGAGAGTGACACGCCCGAGGATGAGGACGACAGGGGCTTCCACCGGTATCGCGCCGACTCAGTGAGGGCCGCGCTCTTGGGCGCGCCGGGCCGCATTCCTGACGCCGCGCTCATCCACGCCGCACGCAAGACCAGACAGCAGGCTCGCGAATTGGGCGGTGGTGGCGCCGCCGGCGCAGATTACATTCCCATGAAATCCGAGTCTGCCCCGGGATCCCGGTTAGTGCGGGATGATGGGTCCGGCGATGATGAGGAGGAAGGCCGGATTCATGTCAGGGGACTGGACTTGCCGAGTGATAAGCCTAAACGTGGCACTGCAGCTGTTTCCGAAGAAGAATTGGACAGTGAATCAGAAGAGTGGGTGGAACAACAGCTGCAGAAGGCGCGGCCCGTCCTCGCGGATCTGACTGgtGAAGCGCCAATAGAAGTGAATCCATTTTCGGTGGCCTTACCGCCACCTCAGATGTCGGCTCCCGAACACTTGCGACCTCTCACGACGGGTACACAGCCTCCAGCTACGGCCAGTGAGCTAGTGGATGCTCTGAGGAAGCGGTTAGGAGAGCTGAAAGTAGAACGTGAAGCAACATCAGAAACTCAGAGAGATCTTCGCGAGAGGTTGCTGAATGCAGCCAGGATACGAGAGAGTCGGGCGTCGCGCTGTGGGGAGTTGGACGCGGCCTATAGAAGGGCGCAGGCCATACGAGGATACCTTACAGACCTTATTGAGTGCCTTGATGAGAAGATGCCACAACTGGAGGCGTTAGAAGCTCGTGCGTTGGCGCTACACAAGCGTCGCTGTGAGTTCCTCATCGAAAGGCGACGAGCAGACCTGAGGGACCAGGCGCAAGATGTACTCGCACCGCCTGGTCGAGCATCAAAAGCAACAGACAACGAAGAGAAGACGCGTCGCGCGGCCGAGCGTGAGGGCAGACGTCGGGCGAGGAGACTGAAGAGAGAGGCCGCGGCTACAGCAGCCGGGGCCGCGCTGCCGCACAGGGACGGAGACTCCTCGGATGATGAGCTGCCTCCGCATGAGATGCACCACTACACACAGGAGAGAGACGCAATCCGTCAGCAATCAGCGTCGTTATTCAGCGACGCCCTGCCGGCGTGGCGCAGTGTGTCGGGAGTGTGCAAGCGGCTGGCTCGCTGGCGGGCGCGGGCCACCGAGCTGTACACGGACGCCTACGTCGCCGACTGCCTGCCCAAGCTGCTGGCGCCTTACGTCAGACATGAGTTAATACTGTGGAACCCGCTGGCAGATGAAGACAACGAAGACTACGAGAGAATGGATTGGTACAAatgCCTGATGATGTACGGTGTTCGCACGGAGCGTGGCACAGACTCGTCCTCTTCGGCGTCTGACGGCGAGCCGGAGCCCGCGCCGGTGACGGACAGTACCGTGCGGGAGGACCCTGACCTGCTGCTGGTGCCCAGCATCATCAGCAGGGTGGTGCTGCCTTGTCTCACAGAGCTGGTGTCAGTGGCGTGGGACCCGGTGTGCGTGCGCTCGTGCACGCGGCTGCGCGGCCTGCTGCTGCGGGCGGGCGGCCTGCCGGGCTGCGCGGGCGGCCTGCGGCGGCTGGCCGGAGCACTGCGCGCGCGGCTGGCGCAGGCGCTGGGCGCTGACGTGTTCCTGCCTGCCTTACCACCGCAAGTAATGGAAGGTCCGGGCGGTGCGTTCTGGCGTCGTTGCCTGGGCGCAGGCGTGAGGTTGTTGCGAGGCACGCTGGCGCTCACTGGTCCGCCTGACCTACTGTATGCTGACCCGCTCGTACTGTCGCTTATAGAAACCCTGTgttgcggcgcgggcgcagcgagCGGGCCGTACGTGTCGCAGGCGGCCGCCGCGCTCACGGCCACCCTGCCGCGCACCGGGCAGCTGCGGAAGAAGGCGCTCGCGAGGCTGGCCGCGCTCGCCACGCTCGCACTGTCGCGGCTCGACAGCGACAACCCATTGCACTTGAAAGCTCTAGAACAAGCAAGAGCAGTGATCGCAGAGGCGCGGGCGGTTGAATGA
Protein Sequence
MSMFRKPKKIQRRVFCADDDEDGEPEAPPPPVISQEREKKEKSSKKTALLSFADEEEEDVEVFKVKKSSQSKRLAKKREKEKQKRDVRTDGDNNKFDTIIVEDKINDTDNSNDKPKAKKKVSLEGLILSGREALAADGAGDVSDESDTPEDEDDRGFHRYRADSVRAALLGAPGRIPDAALIHAARKTRQQARELGGGGAAGADYIPMKSESAPGSRLVRDDGSGDDEEEGRIHVRGLDLPSDKPKRGTAAVSEEELDSESEEWVEQQLQKARPVLADLTGEAPIEVNPFSVALPPPQMSAPEHLRPLTTGTQPPATASELVDALRKRLGELKVEREATSETQRDLRERLLNAARIRESRASRCGELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALALHKRRCEFLIERRRADLRDQAQDVLAPPGRASKATDNEEKTRRAAEREGRRRARRLKREAAATAAGAALPHRDGDSSDDELPPHEMHHYTQERDAIRQQSASLFSDALPAWRSVSGVCKRLARWRARATELYTDAYVADCLPKLLAPYVRHELILWNPLADEDNEDYERMDWYKCLMMYGVRTERGTDSSSSASDGEPEPAPVTDSTVREDPDLLLVPSIISRVVLPCLTELVSVAWDPVCVRSCTRLRGLLLRAGGLPGCAGGLRRLAGALRARLAQALGADVFLPALPPQVMEGPGGAFWRRCLGAGVRLLRGTLALTGPPDLLYADPLVLSLIETLCCGAGAASGPYVSQAAAALTATLPRTGQLRKKALARLAALATLALSRLDSDNPLHLKALEQARAVIAEARAVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01094058;
90% Identity
iTF_01062820; iTF_01064683; iTF_01061910; iTF_00042654; iTF_00040837; iTF_00043520; iTF_01063780;
80% Identity
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