Acla028513.1
Basic Information
- Insect
- Agrotis clavis
- Gene Symbol
- Bcl11a
- Assembly
- GCA_954870645.1
- Location
- OX940933.1:21753295-21768694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.079 9.8 8.3 8.6 1 23 270 292 270 292 0.96 2 12 1e-05 0.0013 20.5 1.9 2 23 300 321 299 321 0.95 3 12 0.47 58 5.9 0.1 1 20 325 344 325 346 0.94 4 12 0.00055 0.068 15.1 3.0 1 23 352 375 352 375 0.97 5 12 0.0017 0.21 13.5 0.2 3 23 381 402 380 402 0.96 6 12 0.051 6.2 8.9 0.1 2 20 418 436 417 438 0.93 7 12 0.00074 0.091 14.7 0.1 3 23 452 473 452 473 0.95 8 12 0.00071 0.088 14.7 1.3 2 23 496 518 496 518 0.96 9 12 0.2 25 7.0 2.2 2 23 530 551 529 551 0.93 10 12 0.0017 0.21 13.5 4.7 1 23 557 579 557 579 0.99 11 12 0.00027 0.034 16.0 0.1 3 23 587 607 585 607 0.97 12 12 0.00091 0.11 14.4 0.9 1 23 613 636 613 636 0.98
Sequence Information
- Coding Sequence
- ATGGGAGACGTTCAAGTGTGCCGTATTTGTTTAAACATTGATGTAAAAATGCAGGACCTTTTTGTATGCCCATTAGAATCTTATTTTGCATCATTTATGATAGAAAATAAGCCATTATACACCAATTTGCCGCTATACGCCTGCTATGAGTGTGCAGCTTTATTGAAGAAGTTTTATTTATTCCGAGAAAAATGTCTGCGAAGCCAGAGTCATCTGTGTGAAATTATTGATGAATATGGGAAGTTAACACATACAGCAATAAAATCAATACCAAGGAAAGATCTCCTCACAATTTCAAATGTCACAAATATTAGTATAAGAGAAGAGGAGAACACAACAGACTGTATGCACATAGAAAGACCTCAATTTGCTGTGGAGGTGATCAAAAAGGAGGATCATGATGATATTGACATTCCTGAACATGTCAGTCCTGATTATAGTtccagtgatgatgatgatgaatgtgagAAGACTGGTAAGAAGAAAATTCATGAATTGGAAAAGGTTGAGATTCCTGTGAAGATGGACATTGAAGGGGAGTTTGAAGATCTTGAACTTCCCGAAACAACAGTTGATGTACCAAAGTTGCCAATCAGAAAATCTCGAACAGCCCAGTCCAAGAAAGGAATAAGGCCAAAGCGGACTCGTACTACAGTTACTAAAAAGAGTTCTACTACAGTTAAGAATGATGACACACAATATGAGAACAAGACTGATGATTTGATCAATGTTATTACTTTGACGCTTGAGGAGCAGTTAGAAGAGATGAACAAACGCAAGCAGTCGTCCAACTACCTGGAGTGTCCGTACAAGTGCCACCAGTGCTACAGGGGGTTCAACAACACGCACGCCTGGAAACATCATCTTACTAAACATTCTCCAAACCTCGGCGACATTGAGTGCAAAATATGCAAGTACAGGTTTAAAACGAAACGGAATCTTCAGAGACATGCATTAAACCATGGAAAGAGATATGTTTGTAACTTATGTCCATACAACTCTAGTAATATAACTACTGTGAAGCAGCATCAAGGTTCTCTTATGGGAGTCACGCACAAGTGCAAGTTCTGCGATGAAGTTTTCAACGTAAGAACAACGTACGTCAGTCACATGCGAATCAAACATCCGTCAGAGAATATTTGCGGATTCTGTGGGTATTCGTTCTACAGCAAACAAGGACTAGTGGTTCATAAGAATATGATGCACAAGGATCTTGAAgcAAAACAAGAAGAGAACGCAGAAGAAGGACTTTACTGTGAAGAATGTGAAGTCAAGTTCATATCGACGGAAGCTTACAAGAGACATCTGGTCATGTCAGTCAAACACACTAGGAGTACCGACTCTATGAACGGGTGTCGAGTTTGCGGTGAGATTTTCACGGATCCTGAACAGTTACGTTTACATAATCGTGAAGAGCATCCTAAGAAACAACCGAAGCATTACAATTATAATAGGAAGAGTCAAGATCGAACAAAATGGCCGGCCAAGTGTCAACATTGTCCAGAAGAATTCGCCACCCCGCGTTCGTACTGGAACCATTACCGTCTGAAACACCCTGACAAGTATGAGCCAGCGCGGAAGAACTGCGTCTGTGATATATGCGGCAAGAGATATGCGTGCAACGCCGTCCTAGATCTCCACAAGCGCACGCACTTCGGCGAGCGTCCGTACAAGTGTTCGCAGTGCGAGCGCGCCTGCTTCTCAGCGCACGACCTGCGAGTGCACCAGCAGAAGCACTCCGACAGCCGGCCCTACGGCTGCGGGCTGTGTGCACAGGCCTTCAAGAGGAAGGAGGCGCTCGAGAGACATTTGAAAATCCATTCCGGCGACAACCCATACAAGTGCGAGATTTGCGGCGTGGCCTTCGCCAAGTCTTGTACGAGAACACTTCATGTCCGCACCGTCCATACTAAGGAGCCACCACCGCCGCGCAAACGACGGAACAAGATCAACAAATAA
- Protein Sequence
- MGDVQVCRICLNIDVKMQDLFVCPLESYFASFMIENKPLYTNLPLYACYECAALLKKFYLFREKCLRSQSHLCEIIDEYGKLTHTAIKSIPRKDLLTISNVTNISIREEENTTDCMHIERPQFAVEVIKKEDHDDIDIPEHVSPDYSSSDDDDECEKTGKKKIHELEKVEIPVKMDIEGEFEDLELPETTVDVPKLPIRKSRTAQSKKGIRPKRTRTTVTKKSSTTVKNDDTQYENKTDDLINVITLTLEEQLEEMNKRKQSSNYLECPYKCHQCYRGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSLMGVTHKCKFCDEVFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKDLEAKQEENAEEGLYCEECEVKFISTEAYKRHLVMSVKHTRSTDSMNGCRVCGEIFTDPEQLRLHNREEHPKKQPKHYNYNRKSQDRTKWPAKCQHCPEEFATPRSYWNHYRLKHPDKYEPARKNCVCDICGKRYACNAVLDLHKRTHFGERPYKCSQCERACFSAHDLRVHQQKHSDSRPYGCGLCAQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKINK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906431;
- 90% Identity
- iTF_00042901; iTF_00042022; iTF_00041139;
- 80% Identity
- -