Basic Information

Insect: Agrochola lychnidis
Gene Symbol: Znf296
Assembly: GCA_963680765.1
Location: OY796848.1:20267388-20284067[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.029 3.6 9.6 0.7 1 21 159 179 159 180 0.95

2 13 0.0005 0.063 15.2 0.6 2 20 193 211 192 215 0.95

3 13 0.039 4.9 9.2 0.9 2 23 255 276 254 276 0.95

4 13 0.99 1.2e+02 4.8 2.3 2 19 283 300 282 303 0.91

5 13 0.011 1.4 10.9 0.3 1 20 380 399 380 401 0.92

6 13 4.1e-05 0.0051 18.6 0.8 1 23 409 432 409 432 0.98

7 13 2.9e-05 0.0036 19.1 2.2 1 23 453 475 453 475 0.98

8 13 6.8e-06 0.00085 21.0 3.8 1 23 482 504 482 504 0.99

9 13 1.4e-07 1.7e-05 26.3 2.3 3 23 518 538 516 538 0.96

10 13 3.2e-05 0.004 18.9 3.2 1 23 544 566 544 566 0.99

11 13 1.8e-06 0.00022 22.9 2.5 2 23 573 594 572 594 0.96

12 13 1.7e-07 2.1e-05 26.1 1.4 1 23 600 622 600 622 0.99

13 13 0.004 0.5 12.3 0.1 1 23 628 650 628 650 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.029	3.6	9.6	0.7	1	21	159	179	159	180	0.95
2	13	0.0005	0.063	15.2	0.6	2	20	193	211	192	215	0.95
3	13	0.039	4.9	9.2	0.9	2	23	255	276	254	276	0.95
4	13	0.99	1.2e+02	4.8	2.3	2	19	283	300	282	303	0.91
5	13	0.011	1.4	10.9	0.3	1	20	380	399	380	401	0.92
6	13	4.1e-05	0.0051	18.6	0.8	1	23	409	432	409	432	0.98
7	13	2.9e-05	0.0036	19.1	2.2	1	23	453	475	453	475	0.98
8	13	6.8e-06	0.00085	21.0	3.8	1	23	482	504	482	504	0.99
9	13	1.4e-07	1.7e-05	26.3	2.3	3	23	518	538	516	538	0.96
10	13	3.2e-05	0.004	18.9	3.2	1	23	544	566	544	566	0.99
11	13	1.8e-06	0.00022	22.9	2.5	2	23	573	594	572	594	0.96
12	13	1.7e-07	2.1e-05	26.1	1.4	1	23	600	622	600	622	0.99
13	13	0.004	0.5	12.3	0.1	1	23	628	650	628	650	0.97

Sequence Information

Coding Sequence: ATGGCCTCTATTCAGGAACCCGACATAAAAATTGAAGAATTGTGTAGAACGTGTTTATCTAAGGATAATGAATTATACTCGTTATTTGATATTCTTATAGGTTCAACAATAACGTTAGATTACATAGTAACATCAACTACTGGAATAAAgATAAGCAAAAATGATGGTTTGCCTTCAACAATTTGCTGCGAGTGTAAAGAAAAAGCATCAAAGGCATTTGAATTTAAGAAAAAATCGGAAGAAGCTAATATGTCCCTTAGAgggatattaaaaaaagaaaataaagaaaactcaaCATCAACTAAAGTTCTAAGTCAAACTAATACATCAGGTGTGAAGACCGAAGATTTGTCATCACATGACAATGTCGACTATGCTGATAGTGATTTCAATGTTTCTCTAAGTAGTGGGCCAGATTTACATGAACAAgAAGCAGTTAAAATTGAGCATGAGAGCCTAGAACGCAAGGCATGCTTTGTGTGCAAAAGCTGCTTAGTCGTTTTCGATACACATTATAAATTACAAGAACACCAGAAGATATGCATAAAAGTCGAGTGTGATGAAACCAACCGTACTTACTGTCCACTTTGCGGTACATGCTACAATGGTGCAGAGAATTTAACGAAACATATGTGGGAAAATCATGCAGACCTTATGGGCCCAAAAAAGAGAGGCAGACCTAAGAAGATGTTAACTAGTACCATACTTAACAAGTTGTCAGAAAATGGATTTTGCATAACATCAATGCCAGCTAAAAAGATTGAGTGCGCATTTTGCAAGCAACATTTCGAAACCAAAGAAGAATTAGGATCACACTCTATAACTCATAAAGATATGAAAGTACTGCGTTGTAGCCTTTGCAAGAAAATATACATCGATAGGAAGAAGTTTGATCATCATGGCTGTATCGAAGAGAAAGCTGATGTAAACAATGTAGAAAATGATTCGGCAAAAACAGAAACCAATGAAAAAGAGACACAAAATTTTCTATTAGAAATCACACTGCGAGAATTTCTAGACCCGAACATGGATATGGAGAACATCAACTTGTTATTGGTATGTAGTGCTTGTAGCTGCATATTGCACTCAGAAGCCGATCTCATTAATCATCGCGATGCTGAACACCCGGAGTTGTCACACCGGTGCAACCTCTGCACTAAGGTGTTTGCTTCCTTGCGATCAGCGGCGCGCCACAGAAGCATTTGTCagcaaatagaaagaaaatataaatgcaACACGTGTGGACTGAAATTCGCTTATGAAATATCTTTGAATAAGCATATTTTAAGATATCATGAGGGACAAAGCGTGTCGGTTAAATTTATCGATTCTAAAACTAAACGAGAAGAGAGACAGTTTCAGTGTGATACTTGCAATAGAAGTTTCTACAAGAGAGACTTGCTAGTTAAACATACTAAAATACACATGCCAATCGAAAACTTCTTCCAATGTGATGTTTGCGAGAAGAAGTTTCACAGGAGTGACAATCTTCGCTCTCACAAACGAGTTCATCAGCCGCAGCGCGAAAAGAGTTCATCTAGTAATTGCTTATGCCTTTACTGTGGGCGCAGTTTCTCTAATTCGTCGAACCTAATCGTACACATGCGGCGCCACACCGGAGAGAAGCCCTACAAATGTGATTTTTGTGGCAAAGGTTTTCCAAGATCTTCCGATCTTCAGTGTCACAGAAGATCTCACACCGGAGAGAAACCTTGCGTATGCCGTGTCTGTGGTAAAGGTTTTTCGCGCAGTAATAAGTTGTCCCGCCACATGCGCGTGCACACTGGCCAGCGGCCGTACAAGTGCACCTACTGCGAGAAGGCGTTCTCGCAGAGCAACGACCTCAACCTGCACATACGCCGACACACTGGCGACCGGCCCTACATCTGCGAAGTATGCGGCGACAGATTCATACAGGGTACTGCGTTACAGAATCACAGAAGAGCTCATGGTCACTTTCCTGCTCCCCCCGCAGAAGCTCCTTCCGAGGTGCAAGCACTGACTTTTACAGTCCAGAGTATAAGCCATAATAATAGTCACTAA
Protein Sequence: MASIQEPDIKIEELCRTCLSKDNELYSLFDILIGSTITLDYIVTSTTGIKISKNDGLPSTICCECKEKASKAFEFKKKSEEANMSLRGILKKENKENSTSTKVLSQTNTSGVKTEDLSSHDNVDYADSDFNVSLSSGPDLHEQEAVKIEHESLERKACFVCKSCLVVFDTHYKLQEHQKICIKVECDETNRTYCPLCGTCYNGAENLTKHMWENHADLMGPKKRGRPKKMLTSTILNKLSENGFCITSMPAKKIECAFCKQHFETKEELGSHSITHKDMKVLRCSLCKKIYIDRKKFDHHGCIEEKADVNNVENDSAKTETNEKETQNFLLEITLREFLDPNMDMENINLLLVCSACSCILHSEADLINHRDAEHPELSHRCNLCTKVFASLRSAARHRSICQQIERKYKCNTCGLKFAYEISLNKHILRYHEGQSVSVKFIDSKTKREERQFQCDTCNRSFYKRDLLVKHTKIHMPIENFFQCDVCEKKFHRSDNLRSHKRVHQPQREKSSSSNCLCLYCGRSFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRVCGKGFSRSNKLSRHMRVHTGQRPYKCTYCEKAFSQSNDLNLHIRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFPAPPAEAPSEVQALTFTVQSISHNNSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00072259;
90% Identity: iTF_01028545;
80% Identity: -