Alot006343.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376248.1:2059538-2089511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.33 25 6.0 0.6 1 23 504 527 504 527 0.95 2 12 0.34 26 6.0 0.5 1 23 535 557 535 557 0.94 3 12 0.68 51 5.1 1.4 1 23 561 583 561 583 0.93 4 12 0.00062 0.047 14.6 0.9 1 20 590 609 590 611 0.94 5 12 0.0062 0.47 11.5 1.0 2 21 618 637 618 638 0.91 6 12 0.00022 0.016 16.1 0.6 2 23 654 675 653 675 0.94 7 12 0.00064 0.048 14.6 0.3 1 23 680 702 680 702 0.97 8 12 0.033 2.5 9.2 4.8 1 21 711 731 711 736 0.93 9 12 3.3e-05 0.0025 18.6 2.3 1 23 744 767 744 767 0.93 10 12 0.0069 0.52 11.3 0.4 1 23 773 796 773 796 0.94 11 12 0.023 1.8 9.7 0.3 3 19 809 825 807 826 0.89 12 12 0.048 3.6 8.7 0.9 1 23 839 862 839 862 0.97
Sequence Information
- Coding Sequence
- ATGAAGGAAGTTAACATAAATATAGAAGGCTATAATGTTAACGGGATATGTGTCGGCTGTTTGAATTACAATCGTCGAATGTTTTATCATCCCACAGTAAAAGAATGTTTTCGTTTGTTGGGAAATATCGATGTGCCAGATGGCCTAGAAGTCCAAGTGTGCTGGGAATGCCTGGCGCGCGTCAATGTTGCTATCAATTTCAAGGAACAGATACTAAAGTCTTACGACTTTCTTATTTCGTACTCTAAAGAGCACACATTCCTGGACTCTCCGACCGACTTCGACCCTCACGCCACAAGCAACATAGAGAGAACTGAAGTGGTGTGTTACGAGTGCGTGCCAGAGGCAGAAGTGGTGGAGGACAATGAGGAAGCGGTTGACGTTAAGGAGGAAGAGGAGTGTGAGAATAAATATGGTTTCGAGGTAGCAATAAAAGAAGAAACTTATGACGACCCATACTTCCAAGATATGCCAGCTGTTGACAATGATATCACATCGGATGAAGACGTGCAGCTTTCTAAACTTAAAGAGAAAGAGACGGAGAAAGGGAAGAAGAAGAGAAAGAGTGAAAAGAAGAAGGAAAGGGAGAGGGATAGAATGCCAACCAGCAAACGGCCGAGAAAGACGACAAGAGGTCTCTGTGACGTATCACAGTTTGAAGCTGCTTATGACCAAATAGTCAATCATGGGATGTCAGTACGAAAAGCGGGCAAAATGTTCAATATCACACACGTCACCCTACAAAGATACAAGAAAAGACGAGAAACCACAAATTTCCCTGTCAAAGTTGGCTATGCACGTAACAGTTTTTATACCCCAGAACAAGAAACACTATTAACAAAATATTTGAAAAAATATGCCGAGATATTTCCTGGGTTATGCGTAAAGGTAGTCAGAAAGTATGCCACGGAATTCAGTCAGAAACTGGGTTTGAAAACTCCGAAGCCTTGGGTTGATAATGAAATGGCTGGCATTGATTGGTATAAGAATTTCATTTACAGAAATAAAGCGTTGGAAGATAAAATTGCTCGGCAATCTGCCAAAGAAAAGGTTCAACATTTTTATGACAAATTGTGGAGTATATTATGCCAGTACAACTTTGGTTCTGAAAATATTTACTCTTTAGACGAAATTGGGGTTAATATTGAAGAGTTTAGAGATAAAATTTGGTTGATGACGACGAAAAATGGCCCGATAGCCTTGAAGGAGTCTAAAGTGATGTTCACTTATGCAGCCAACGCTAAAGGATATTTTATTCCCCCTTTATTCTTAATACCAGGAGAGAAAAAAAAAGAAACTTCGGAAAACAACGCTGAAGTCAAAATAGAAAAAGATTTGGTGGACTCCCCAAAACGTCAAAAGACTAAGAAGGACAAGAACCCCGACAAGAAGAGTAGGAAGCTAAAGAATCTCCCAGAAGAATTGGTAGAATTGTACACTATGAGTAAAGAAGAGATGTGGGCTATCAGAATTGAGGATCTGAACAGCAAGGAGTTTCAGAAGCTTAAATATAGGTGTGACGATTGCATCATTGCCTTCAACACGGAGAAATTGATGCATGACCATCTAAACGGAAAACATCAACCTAAAAGTGAAGACTGCCATCAATGCTCAATATGTCAAGCCTACTTCTTAACTAAAGACAACGTGGCCGCGCACAAGGCATTACATCAGCAAGGCTATAAATGTCGGGAGTGTGGCTTCAATACTACGCTGAAACGACGCATGTTGAAACATGTTGGGAGTCACGCTCCGAGTGGAGATGCTCATGTATGTCAGACTTGTGGGAGTAGCTTTAGCACAAAATCGAAATTAACATACCACCGCGGCGTCTGTTGTCAAGAAAGGCCACAATGCGACTGCTGTGGCAAAGTATTCGCTAACAAAATGACACTCAAGTACCACCTCAAAGTCCTGCCACAGAATAAAGATGATAAGCCCAAAGAAAAGTTGTTTATACCATGTAAAGGATGTGATAAAGTGTTCCATTCTAAGAAGAGTTATAGAGCGCATGTTGTAATCCACGACGGTCTAACCTACCCGTGCCCAATTTGCGGTAAACTGTTCCAATGGAAGCGCAACCTGGCGCGACACTCGCGCAACCATCGCGAGCGACAGGCGGGCAACTTGCACGAGTGTCGCGCTTGCAGCAAGACTTTCGCAAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTTTCGCAGGATACTTTCCCACATGAATGTAACTACTGCGGAAAGAAATTCGCTACAAAATGGTGCCTGACCGACCATATCGACTGGGATCACCTGAAGAAAATCAAATACCAATGTAGCTTCTGTTTCAAGGCATTCAAAACAGCTAAAATTTTGGTAGCTCATGTCAATAATATACACGAGGGTAAGAAGAAAGAAGCAGAGGGCGAACATCTATGTGAAATTTGTGGGAAATCGTACAGGACAGTGAAACGTCTAAAAGGCCACGTATGGGCGATGCACACAAAACGGTCAAGCAGCAAGATATACAAATGTAAACTATGTCCGGCCACATTCATGTGGCAGACCAGCATATACAAGCATATGAAGATGATGCACGATAGCAACAAGAAGAGTAAGACACCTCGCGCCGTCCAACCAGTGAAGAAAGAAGAGCCCTACCCGGGAATCGAACTAGCTAATCGAATGCAGTACTTCCAGCAAAACATTGGAGGCAACTTAAATATAGTTCACATACAACCTTTGGGCATGCCTCAGAATATTGTTTAG
- Protein Sequence
- MKEVNINIEGYNVNGICVGCLNYNRRMFYHPTVKECFRLLGNIDVPDGLEVQVCWECLARVNVAINFKEQILKSYDFLISYSKEHTFLDSPTDFDPHATSNIERTEVVCYECVPEAEVVEDNEEAVDVKEEEECENKYGFEVAIKEETYDDPYFQDMPAVDNDITSDEDVQLSKLKEKETEKGKKKRKSEKKKERERDRMPTSKRPRKTTRGLCDVSQFEAAYDQIVNHGMSVRKAGKMFNITHVTLQRYKKRRETTNFPVKVGYARNSFYTPEQETLLTKYLKKYAEIFPGLCVKVVRKYATEFSQKLGLKTPKPWVDNEMAGIDWYKNFIYRNKALEDKIARQSAKEKVQHFYDKLWSILCQYNFGSENIYSLDEIGVNIEEFRDKIWLMTTKNGPIALKESKVMFTYAANAKGYFIPPLFLIPGEKKKETSENNAEVKIEKDLVDSPKRQKTKKDKNPDKKSRKLKNLPEELVELYTMSKEEMWAIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVGSHAPSGDAHVCQTCGSSFSTKSKLTYHRGVCCQERPQCDCCGKVFANKMTLKYHLKVLPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHRERQAGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDSNKKSKTPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGMPQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01441431;
- 90% Identity
- iTF_00121818;
- 80% Identity
- iTF_00037740;