Alot001123.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- clz9
- Assembly
- GCA_947364205.1
- Location
- OX376231.1:4544372-4546609[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-10 4e-08 33.3 0.0 1 36 16 52 16 59 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGAAAGTATGTGAAAAAGGGGCCCAGAACGGGACAAGTAGACGAAGACAGCATGAAATCTGCGATAGACGAAGTTTTGAATAAAACCTTATCTATCAGAAAGGCTGCGCAAAAATATGGCGTCAAACCAACTACGCTCGAAAGTCGCTTGACGAAGTTACATAAACAAGCAGCTACTGAAGACAGACATAGTAAGGTACGTGTTTTCAGTTCCAAATACTCTTCAAACCAAGTGTTTTCTGCAGAAGAAGAGGCTCATTTAAATACGTACATAATGAAATGCTCCAAAATGCACTACGGATTGACGATTGTCCAAGTAAGAAAACTTGCGTACGAGTTTGCAAAAGCTAATAGATTACGTTATCCTTCTAATTGGGATCACAATCAAATGGCAGGAAAGGATTGGGTGGAGAGTTTTCGCAACCGTTGCACAAATTTAAGCCTCAGAAAACCAGAAAACACCAGGACCGCAAGGTGCTTCGCATTCAATAAAACTGCCATAAAAGATTTCTTCGAAAACCTTGAGACTGTATACGTAAAATACAAGTTCACTGCTGACCGAATTTACAATTTTGACGAGTCGGGGATATCCACAGTATTAAATACGCCCAAGGTTTTAGCTGAGAAAAACCAAAAACAAATCGGTCAACTTGTTTCGGCTGGGAGAGGAGAACTTGTTACATTTGGAGGAATCATATCAGCCAGTGGCAACACAAATCCGCCTCTATTTATCTTCCCCAGGGTTCATTTTAAAGACCATTTTATGGACGGTGCTCCGGAAGGTAGTCTGGGAATGGCAACAAGGAGTGGTTGGATAAATACCACTATATTTTTGGAGGTGTTGAAACATATCCAGAAGAAAACGTTGTGCTCAAAAGATAACCCTATCTTGCTACTGGTTGATAACCATGAAAGCCACGTCACAATAGAAGCAGTAGACTATGCTCGTGACAATGGCATAGTTTACCTTTCGTTCCCACCGCATACAACTCACCGTCTTCAGCCCTTAGACGTTGGTGTATTTGGACCTTTCAAGGCAAAATTGAAAGTGGCATTTAACGATTGGCATGTAAATAACCCGGGCAAAACTCTAAACATATACAATATACCGAAGCTTGCCAAAGTAGCCTATTTTGAATCATTCAGTGGGAGAAATATAACACGTGCCTTTGAGAAGACTGGAATCTGGCCATTTAATAAGCTAGCCTTCGGAGACGACGACTTTGCAGCTGTAAGCGTATACCAATCCGGGTCCACGTCAGCTCCAGAAGAGATCGACGAGATAGGTAATGTTGAAGATGTGGAACAACAAGATTTACCAACAGGGTTGGCCCCTACATCAGCTTCTTTTCCGCCACAGTCAGAATCCGCACAAGGTGAGCAGTCTATTTCAACAGCGAGTCAAGTTGCCAATGTATCGGAAACGGAGCTTACTCAAGAAGATCTCCTAGAGAGCTTAGTTCCTGTTTCACCTTCCTTACATAGATCTACAACTCCACCGGCGACTTTACCTGCTGGAGGACTAATAACTCCAGAAGTTATCCGGCCTTACCCTATAGTAGACAGAACTGAGTCTAAAAAGTCGGGAAAAGGGAAACAGCAAGGAAAGTCGAGAACATATACAGATACTCCGGAGAAAATAAGACTAGAAGAAATAGAGAAAGCAAAACAGTTGAAGAAGCAAGAGCAAGAGATAAAACAAAAGGCTAAGGAGATGAAGCGAGCATTAAATTTAGTATCCGCCAACACCAATCCAAAAAGACAGAAGAAAACTGTAAGGACAACTAAATCAAAGAGGCAAAAGAAAACTTTCAAGCCTGTCAGTGAGGACGAGTCTGATTCTGAGGATGAAACTAATATCAGTTTAAGAGAAAGTTCTTGTTCTCCCATCGAAGAAGCGTCCGAGCAATTGGATGTTCAAGATGAAACTCCAGTTATGTCTATGAACATTAACCAAGGATGTTTCGTGCTAGTCAAATTTGCTAAAAAAAATACTGTTTTATATTATGTTGGGCAAGTGCTTATAAAGTACAGTCCTATTGTATACATAGTTTCATTTATGAGGAAGAAGCCTGGTTCCTGGAAATTTGTTTTTCCCACCACCAAGGATGAGGGGAGTGTCAATATAACAGATGTGGTACATATACTGGCACCATCAAAATCTGCTTTGACAGCGAGAACGTCCCATATTTATAGCTTCGAGAAAGACTTATCTATGTATGCTGTCGGATAG
- Protein Sequence
- MPRKYVKKGPRTGQVDEDSMKSAIDEVLNKTLSIRKAAQKYGVKPTTLESRLTKLHKQAATEDRHSKVRVFSSKYSSNQVFSAEEEAHLNTYIMKCSKMHYGLTIVQVRKLAYEFAKANRLRYPSNWDHNQMAGKDWVESFRNRCTNLSLRKPENTRTARCFAFNKTAIKDFFENLETVYVKYKFTADRIYNFDESGISTVLNTPKVLAEKNQKQIGQLVSAGRGELVTFGGIISASGNTNPPLFIFPRVHFKDHFMDGAPEGSLGMATRSGWINTTIFLEVLKHIQKKTLCSKDNPILLLVDNHESHVTIEAVDYARDNGIVYLSFPPHTTHRLQPLDVGVFGPFKAKLKVAFNDWHVNNPGKTLNIYNIPKLAKVAYFESFSGRNITRAFEKTGIWPFNKLAFGDDDFAAVSVYQSGSTSAPEEIDEIGNVEDVEQQDLPTGLAPTSASFPPQSESAQGEQSISTASQVANVSETELTQEDLLESLVPVSPSLHRSTTPPATLPAGGLITPEVIRPYPIVDRTESKKSGKGKQQGKSRTYTDTPEKIRLEEIEKAKQLKKQEQEIKQKAKEMKRALNLVSANTNPKRQKKTVRTTKSKRQKKTFKPVSEDESDSEDETNISLRESSCSPIEEASEQLDVQDETPVMSMNINQGCFVLVKFAKKNTVLYYVGQVLIKYSPIVYIVSFMRKKPGSWKFVFPTTKDEGSVNITDVVHILAPSKSALTARTSHIYSFEKDLSMYAVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00751982;
- 90% Identity
- iTF_00831115;
- 80% Identity
- -