Alit006412.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola litura
Gene Symbol
MBD-R2
Assembly
GCA_949152395.1
Location
OX424493.1:8331171-8356122[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4e-16 4e-12 47.0 0.0 5 59 736 794 732 854 0.80

Sequence Information

Coding Sequence
ATGGCTGTAAAAAAATGTTGCATTGACAACTGTAAGTCATGTTCTACAAGAAAGGAGGATAAAGGTGTAACATACCACAAGTTTCCAAAAAATGTTGCATTACGCGACATTTGGATAACCGTAACACATAACAAACACACAGACACAGAGTTGCCCAAGTTTGTATGCTCGCGGCATTTctgtaaaaatgattttcaaagtTTCAAGGACTCTAAATACAAATTGAGAACAGATGCGATTCCATCAATATTTCCAAGGGATTCTGACAGTGACGAAGAAATGGAAGACATAATTGCTCCTGTGGAAGGTTTTAGCAAAGATTGTGAAGTTGAGAATGTGGATGCTATAAAGAAATTTATTGAAGCACAAGAGAAAGAGATACAGGATCAGAGAGAAGCAGATATTCAGACTAGCGAGAAAAATAATGCTGCAGATGTTAATAAGCCAAGTCAGGAAGAGACGCTTTGTGTGGCCAGCAGTGTGATAGATATGATATTGAATGAGTCAGAGCTAGAGATTGCTAGGAAGAAAGATGTCGCAAATAAGGAGGTTTTTAGCCCTGTGGACAAAGGTAACAGCAGTATGGCACTCTCCATTGGTTCTAAAGTCGAAGTTAGGGACTTTGGAGATGAATGGCATCCTGCAGAGATTATAGAAGTCGACTATGAAGATATGGAAGTGCTCGTACATTATGTCGATATAAAACGACATGACGAATGGATAAGCGTGAGCAGTCCACGCTTACGTCCGGTCAGTTCATCTGCTGCCAGTAGTGTCACAACTACAACCACGGTGAAGCCCGGCCCTAGTTCCGAGGAAAGCCTTACTGATACTATTCCGATAGCCAATTTGAAAGAGGAACCTAAAGATATAAAGGTCGACGAGAAGAATAGGCTAAGCTACGCGGTGGGCGAGCGATGCCTCGCGAGGTGGCGCGATAATCGACGCTTTATAGCGACTATTCTTAGAGATTTAGGGGATGGCAATTACGAGATAGTATTCGACGATGGTTGTCATTGGACGTGTAACACGAGTAGGCTCCACAAACTGCGCTCGAAGTTGGGCGAAGCTGACGCGACGTCGGCCCCCCTCACGTACGGCGCGGGGCCTAGCAACACCACcccacaaacaaacacacagttcCCTACCCCTGCCTTCCACACACATCTCTTCGATCCCACAAGAGACTACTTAGGATCAAAAAGTGAACGCCGCGAAATGAAACGTAAACTTAATATAAAAGAAATATTCAATATAGGACAGAAAAAGTCGCGTAAGGAGAAGATTCACAAGGAAAAGTCGCAGAAGACAGTCGAAAGGAAACCAAGGATTCTGAAGAAGAGAAGAGAGAAGGTGGTCAAATTGAAGCTTGAAAGTGAAGTGAAGACCGAGATAAAGACTGAACTACCTGCCGTAGATGCCGTAGCTTCCATCATTGGTACTGTAAGCCAAGAGGAACCAGTATCCCTGGAAGTTACGAAAGAATTGACGGAAAATAAGAATCTGGAACCAGTCCTGGAGGATACTAAGGAGAAAGTAGAACAAGGAACCACTGACTTGACGAATGAAGAAGTTACTTTACCTGCAGAGCACGCTGCTATTGATATTGAAGACCTTATTCAGTTGGAAGACCTGAAAGGTGAACTGGATCCGgtACTCGACGAGGAAGTGAAACTCCAACAATTCGAGAAACTAGACGACGTCAAACACGAAGAAGTTATTGACAGAATCAAAGAGGTCATCAACAAACTAGAGGACGGTCTGAACAACGTTGAAAAGATCGGCTCACCCAAGCTAGAGCCGAAAGAAGAAATACTGACATCTCCAGAAATAAAACCAGAACCAAAAGTAGAAGTTAAACAAGAGTCAGATGAGAGGACTGAACCAAAAGATAGAAGTAAGAAATTATCAAAGATAAAGAAGGGTAAGAAATTGAGGATGTTACGGGAGAAGAAAGTGAAGAAACAAGTGGAGAAGGTGAAGAGTGAGCTGGAGATGATGAAGAAGCAAATGGATGAGATGCGGCAGCAGATGCTGAAGGGGCAGGAGTTGGGGAAGGGCGCGGCGATGCCGGAGTCATTCCTGATGCCAGGCGAGTGGTGCTGCCACTGGGTGAATGGCCAGCCGGTGGGGGCTGTGAGTGAGATCGAGTGCGAGCCTAGGGGGGAGCCAGGTGCACAGGCACCGCTGCCTAGGAGGAGTGTGCAGGTCGAAGACAAAAGATTACCAGAGGGCTGGACCAAGCACATGGTTCGTAGGAGCTTCGGCCATTCTGCAGGCAAATGGGACGTTGTGTTAGTCAGCCCCGACAACCGCAGATTCCACACGAAGAACGAAATGCGTTTATATTTAGAGAACAAGCCAGAACTTATGGAGCAAGGGTACGAACACGCGCTGACAGACTTCGGCGTGCACTTAAAGATGGCGCGGCGTCTTGGCTGGATCTCGCACACGCCCGACGGAGCCCCGGGTGCCGCCCCCCTGCCGCCCGGCACGCTCAGTAGCACCTCGCCGCTCGTCAAGCGAAGGAAGCTTAGTCTTAAGAAAAAGAGAGACAGAGATAGTAAAGACAAACAGAGGAGGCCCAGAATAACTCTTAAGATGAAAATGCCGAAAGATTATGTACCCTCAGAAGACTCTGTGCCATCTCCAGGTGGTTTAAGCGTCAGTGACAGTATTCCCGGTGAAGCCTACCTCGATGCGCCGCCATTAGAAGACGGATATGTATATGTGGGCTCACTAAAAGTGCAAGTAATTGATAATCTTCTTCGTTGTCCGGCTGAGGGTTGCGTCAAAAATTTCAGAAACAACACTTTACTACAGATGCATATCAAACACTATCACAAAGAACTCAGAAAGATGATGGGAGCGACTCCTAAAGTGTTAGACTTAGCGTACGCAAGAACCAGGCCAGTGGGGGTGGAAACTCCTCGCTCTAAAGACGATCACAAGATCATTAAAGTGAAGATACCGCGACCACCGAAACGTGAGGAACCCAAACCAGAAGTAAGAGACATTCAAACTGAATTACATGTGGATACAACACCCGTTACGCCAGTCAAAGATGGCGATAGCATAACTGTGCCCAGGAGTCAGGACTCGCCCAAACTTCGCCAGGCTCTCATCAACAAGCCTGTGAAGCGGCCAAGAGTGTTGCTACCCGTTCGAAGACCAGAACTCGAGCAGGTCATTTCTGACCCTATGAACGAAGAGATAGATGTAGAAGACAGAGAACCTATAGAACCTGTCATGGAAATACCAGCTTTAGAAATACCGTTAGACTTCGAGAGTGCGATATCAACGCATACTGTGACCAAGCCTATGTTTGAGAAGAAGCGTAAAGGCGATAAGCGTCGGAAAACCTTCGTGGTAGCTGCCAAGAGGCCAGCTAGTGAAGAAGAGGACTGGTTTGGGGCGAACTCGGACTTTGAAACCAGGTCCAGTTTCCCCAGGTCTGGAACACCAGACTCGAAGGTCGATTTTAAAGTGGCGCCCGTGTCTTCCGAGTCCAATGAGGAGATTAAAGACGCTAATATGTATATGTTTACTGAgaACGGCGAGAGGATAAAGATAGTACACATGAAACGCGAAGAGATCATCAACTGTCACTGCGGGTTCCGCGAGGAGGACGGGCTCATGGTGCAGTGTGAACTGTGCCTGTgctggcaacacgccatgtgcCACAACATACAGAGGGAGTGTGACGTGCCAGAAAAATACACATGCAGCATCTGCCTAAACCCTCGCCGCGGTCGCCGGTCGCAGCGGTTCCTGCACGACCAGGATCGCATGTACGAGGGTCTGCTGCCGGCCGGCAAGCCGTGCGAGACGTTAAGACGCTCGCACGAAGTCGCCGGCAATCTGCTGAGGATCGAGGATGCTCTCCATGCGTTGAGGGTCAAGTACTATGTGGCTACCAAGAAAGACCATCCAAAACTCTACCTCTGGGCCAAAGATTGGGAGCAGGTGGAGATCCAGTACACGCAGGAGAAGTTGAATTCGGACTACTCGGACCTGAACATCATGATCAACAGCATGAACAAGGAGAACCAGCCGCTGCGGCCGGACGACGTGAAGGACTTGCCACTGGACATACGCGCCCCGACCTTTGATGAACAGGAACATGAGAGGTACACACAAAGGGACGGCCCGCTTGGTACCCACGCTCTACTGAGTGGTCTGCTATCAAGTCCGGGCGGCGCGTCATTAGACCTGCCTATCAGCACCTCGGAGTTGGAACGACTTGCCAAATCTGTTCAAGAGCAAGAAGCCCAGCGTGCCGTAATCTTAGCCCCGCAGCCCGAAGCGCCTATAGAGAACGCGGCGTGTCGCCGACAGCTGTTGAAGCACCTGCAACGTTGCCAAGCGCTAATCGACGCACGGCTTGACTCCATCGAGGCGCAAGTTGCAGaacTAGAATCTCAAGACCCATCATTTGAGGACGATGAGACAGCGGACTACTTCCCGCGAACCAAACAGACGGTACAGATGCTGATGCGAGATCTGGATACAATGGAGGAGCTAGGAATCATCACCTAA
Protein Sequence
MAVKKCCIDNCKSCSTRKEDKGVTYHKFPKNVALRDIWITVTHNKHTDTELPKFVCSRHFCKNDFQSFKDSKYKLRTDAIPSIFPRDSDSDEEMEDIIAPVEGFSKDCEVENVDAIKKFIEAQEKEIQDQREADIQTSEKNNAADVNKPSQEETLCVASSVIDMILNESELEIARKKDVANKEVFSPVDKGNSSMALSIGSKVEVRDFGDEWHPAEIIEVDYEDMEVLVHYVDIKRHDEWISVSSPRLRPVSSSAASSVTTTTTVKPGPSSEESLTDTIPIANLKEEPKDIKVDEKNRLSYAVGERCLARWRDNRRFIATILRDLGDGNYEIVFDDGCHWTCNTSRLHKLRSKLGEADATSAPLTYGAGPSNTTPQTNTQFPTPAFHTHLFDPTRDYLGSKSERREMKRKLNIKEIFNIGQKKSRKEKIHKEKSQKTVERKPRILKKRREKVVKLKLESEVKTEIKTELPAVDAVASIIGTVSQEEPVSLEVTKELTENKNLEPVLEDTKEKVEQGTTDLTNEEVTLPAEHAAIDIEDLIQLEDLKGELDPVLDEEVKLQQFEKLDDVKHEEVIDRIKEVINKLEDGLNNVEKIGSPKLEPKEEILTSPEIKPEPKVEVKQESDERTEPKDRSKKLSKIKKGKKLRMLREKKVKKQVEKVKSELEMMKKQMDEMRQQMLKGQELGKGAAMPESFLMPGEWCCHWVNGQPVGAVSEIECEPRGEPGAQAPLPRRSVQVEDKRLPEGWTKHMVRRSFGHSAGKWDVVLVSPDNRRFHTKNEMRLYLENKPELMEQGYEHALTDFGVHLKMARRLGWISHTPDGAPGAAPLPPGTLSSTSPLVKRRKLSLKKKRDRDSKDKQRRPRITLKMKMPKDYVPSEDSVPSPGGLSVSDSIPGEAYLDAPPLEDGYVYVGSLKVQVIDNLLRCPAEGCVKNFRNNTLLQMHIKHYHKELRKMMGATPKVLDLAYARTRPVGVETPRSKDDHKIIKVKIPRPPKREEPKPEVRDIQTELHVDTTPVTPVKDGDSITVPRSQDSPKLRQALINKPVKRPRVLLPVRRPELEQVISDPMNEEIDVEDREPIEPVMEIPALEIPLDFESAISTHTVTKPMFEKKRKGDKRRKTFVVAAKRPASEEEDWFGANSDFETRSSFPRSGTPDSKVDFKVAPVSSESNEEIKDANMYMFTENGERIKIVHMKREEIINCHCGFREEDGLMVQCELCLCWQHAMCHNIQRECDVPEKYTCSICLNPRRGRRSQRFLHDQDRMYEGLLPAGKPCETLRRSHEVAGNLLRIEDALHALRVKYYVATKKDHPKLYLWAKDWEQVEIQYTQEKLNSDYSDLNIMINSMNKENQPLRPDDVKDLPLDIRAPTFDEQEHERYTQRDGPLGTHALLSGLLSSPGGASLDLPISTSELERLAKSVQEQEAQRAVILAPQPEAPIENAACRRQLLKHLQRCQALIDARLDSIEAQVAELESQDPSFEDDETADYFPRTKQTVQMLMRDLDTMEELGIIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00425409;
90% Identity
iTF_01440021;
80% Identity
iTF_00036805;