Alit003012.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424491.1:4525278-4528829[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-10 1.1e-07 32.9 0.0 4 35 37 69 34 74 0.92
Sequence Information
- Coding Sequence
- ATGATTGAAAACTCCCAGGCCTGGCTAGGAGCCTCCACATCGGCAGCAATTGCTGATTACCACGGTCATAGCACTCGCAAGCTGAAGTCTCCAACGTGGACACAGAGTCAGCTGCAAGAAGCCATCCAAGCCGTCGTCACCCAGAGGATGAGGTTCACGCAAGCCGCCACACACTACGGCATTCCTAAAGGAACCTTATACGATAATATACTGGGGAAATCTAAACGAATGGCCGTCTTAGACGAAGCAAGTCTCCTAGCCAGCGAAGAAAGGGCCGTGTTAGACTTCTGCTGCGAGACCAACGTCTCCCCTTATAACAGACGAACTAAAAAGTCCCTAAAAGAAATACTGCCTTATGTAGAAAAGTTGAGAAGGATAAGGGACCCAGGGTTCTCGTTCATAGGTCTGACAGGGTTCAGATGGTGGTGGGCCTTTTGTAAGAAGCATTCTATAGTGTCTTTGTACTATGAAGGGTCGGTAAAGAATAAAAACCCCAAAGTTAAGACGATGAATCGTGATCTTGAGATTAACTGA
- Protein Sequence
- MIENSQAWLGASTSAAIADYHGHSTRKLKSPTWTQSQLQEAIQAVVTQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEASLLASEERAVLDFCCETNVSPYNRRTKKSLKEILPYVEKLRRIRDPGFSFIGLTGFRWWWAFCKKHSIVSLYYEGSVKNKNPKVKTMNRDLEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285473; iTF_00274371; iTF_00273541; iTF_00809995; iTF_00809041; iTF_00973699; iTF_00951735; iTF_01117123; iTF_01118216; iTF_00706886; iTF_01502019; iTF_01342151; iTF_00425313; iTF_00049835; iTF_00932394; iTF_00111564; iTF_00124172; iTF_00375148; iTF_01062734; iTF_00446049; iTF_00120421; iTF_00373902; iTF_00667315; iTF_01094838; iTF_01093006; iTF_00302032; iTF_01531913; iTF_00301099; iTF_00122321; iTF_00831123; iTF_01440947; iTF_00187092; iTF_00187091; iTF_01246772; iTF_00177045; iTF_00869560; iTF_00851724; iTF_00018107; iTF_01538680; iTF_01075353; iTF_00281062; iTF_00907811; iTF_00172804; iTF_01026020; iTF_00726245; iTF_00745573; iTF_00906981; iTF_01260037; iTF_01439846; iTF_00771815; iTF_00039720; iTF_01029193; iTF_01230474; iTF_01093963; iTF_00924556; iTF_00448973; iTF_00889133; iTF_01028205; iTF_01534733; iTF_00237422; iTF_00300110; iTF_00072111; iTF_00447055; iTF_01063695; iTF_01152016; iTF_00685362; iTF_00363955; iTF_00850579; iTF_01061812; iTF_01338676; iTF_00041717; iTF_01491830; iTF_01031063; iTF_00043416; iTF_00711769; iTF_00121339; iTF_01030140; iTF_00758077; iTF_01525885; iTF_00282206; iTF_00037727; iTF_00906047; iTF_00952639; iTF_00042560; iTF_01027232; iTF_01532960; iTF_01221465; iTF_00123292; iTF_00038653; iTF_00040734; iTF_01424990; iTF_00622744; iTF_00450045; iTF_01339999;
- 90% Identity
- iTF_01527027;
- 80% Identity
- -