Xtog006850.1
Basic Information
- Insect
- Xanthia togata
- Gene Symbol
- -
- Assembly
- GCA_963853775.1
- Location
- OY970790.1:4492676-4499838[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-10 1.7e-07 32.4 0.0 4 35 81 113 78 118 0.92
Sequence Information
- Coding Sequence
- ATGGATAATGCAGGAGCGACTAATGAGACTTCAAAGCCTTCTGTTGCACATAAATGGCAAATGTTTAATGACATTATCGGCAACCACGTGCTTCCGGTATGCAAAATTCCCCCAGAGAAGTGGACTGCCAAAATGATTGAAAACTCCCAGGCCTGGCTAGGAGCCTCCACATCGGCAGCAATTGCTGATTACCACGGTCATAGCACTCGCAAGCTGAAGTCTCCAACGTGGACACAGAGTCAGCTGCAAGAAGCCATCCAAGCCGTCGTCACCCAGAGGATGAGGTTCACGCAAGCCGCCACACACTACGGCATTCCTAAGGGAACATTATACGATAATATACTAGGGAAATCTAAACGAATGGCCGTCTTAGACGAAGCCAGCCTCCTAGCCAGCGAAGAAAGGGCCGTGTTAGACTTCTGCTGCGAGACCAACGTCTCCCCTTATAACAGACGAActaaaaagtcattaaaagaAGTACTGCCTTACGTAGAAAAGTTGAGAAGGATAAGGGACCCAGGGTTCTCGTTCATAGGTCTGACAGGGTTCAGATGGTGGTGGGCCTTTTGTAAGAAGCATTCTATAGTGTCTCTGTACTATGAAGGGTCGCTTAAGAATAAAAACCCAAAAGTTAAGACTGAGTTCAACCCGGACGATGAATCGTGA
- Protein Sequence
- MDNAGATNETSKPSVAHKWQMFNDIIGNHVLPVCKIPPEKWTAKMIENSQAWLGASTSAAIADYHGHSTRKLKSPTWTQSQLQEAIQAVVTQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEASLLASEERAVLDFCCETNVSPYNRRTKKSLKEVLPYVEKLRRIRDPGFSFIGLTGFRWWWAFCKKHSIVSLYYEGSLKNKNPKVKTEFNPDDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064586;
- 90% Identity
- iTF_00425313; iTF_00274371; iTF_00907811; iTF_00973699; iTF_00172804; iTF_01026020; iTF_00273541; iTF_00726245; iTF_00745573; iTF_00906981; iTF_00281062; iTF_01439846; iTF_00039720; iTF_01029193; iTF_01531913; iTF_01230474; iTF_00301099; iTF_00809995; iTF_01093963; iTF_00375148; iTF_00924556; iTF_00448973; iTF_01028205; iTF_01534733; iTF_00237422; iTF_01093006; iTF_00447055; iTF_01063695; iTF_00302032; iTF_01152016; iTF_00122321; iTF_00809041; iTF_00685362; iTF_00363955; iTF_01440947; iTF_01061812; iTF_01338676; iTF_00177045; iTF_01491830; iTF_01031063; iTF_00043416; iTF_01538680; iTF_00711769; iTF_00121339; iTF_00123292; iTF_01030140; iTF_00038653; iTF_00758077; iTF_01525885; iTF_00282206; iTF_00037727; iTF_00906047; iTF_00952639; iTF_00036576; iTF_00042560; iTF_01027232; iTF_01532960; iTF_00928602; iTF_00040734;
- 80% Identity
- iTF_00906981;