Ppyg005875.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000041.1:1392744-1394706[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.1e-11 6.9e-08 32.3 0.0 4 35 37 69 36 74 0.93
Sequence Information
- Coding Sequence
- ATGATCGAAAACTCACAGGCATGGCTGGGAGCTTCCACATCAGCAGCAATTGCAGATTACCACGGTCATAGCACACGCAAGCTGAAGTCACCGACGTGGACTCAGATTCAGCTGCAAGAAGCTATTCAAGCCGTCGTCACTCAGAGGATGAGGTTCACACAAGCTGCCACACACTACGGCATTCCTAAAGGAACATTATACGATAATATACTTGGGAAATCGAAACGCATGGCCGTCTTAGACGAAGCAGGATTATTAGCATCCGAAGAAAGAGCCGTGTTAGACTATTGTTGCGAAACCAATGTCTCTCCTTATAATAGACGGACTAAAAAATCTTTAAAAGAAGTATTGCCATTTGTAGAAAAATTAAGAAGGATACGGGACCCAGGGTTCTCGTTCATTGGTCTAACAGGGTTTAGATGGTGGTGGGCCTTCTGTAAGAAGCACTCCATAGTGTCATTGTACTATGTGGGATCGCTTAAAATGAAGAACCCAAAAGTAAAGACTGAATTGAACCCGGACGACGAGTAG
- Protein Sequence
- MIENSQAWLGASTSAAIADYHGHSTRKLKSPTWTQIQLQEAIQAVVTQRMRFTQAATHYGIPKGTLYDNILGKSKRMAVLDEAGLLASEERAVLDYCCETNVSPYNRRTKKSLKEVLPFVEKLRRIRDPGFSFIGLTGFRWWWAFCKKHSIVSLYYVGSLKMKNPKVKTELNPDDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036576;
- 90% Identity
- iTF_00373902; iTF_00831123; iTF_00446049; iTF_00120421; iTF_00124172; iTF_01062734; iTF_00072111; iTF_01094838; iTF_01339999; iTF_01342151; iTF_00049835; iTF_00111564; iTF_01118216; iTF_00622744; iTF_01117123; iTF_00667315; iTF_01246772; iTF_01424990; iTF_00300110; iTF_00951735; iTF_00850579;
- 80% Identity
- -