Basic Information

Insect: Agriphila straminella
Gene Symbol: Kr
Assembly: GCA_950108535.1
Location: OX467320.1:4515870-4517669[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0056 1e+02 4.1 0.9 21 50 18 47 10 50 0.87

2 13 0.054 9.9e+02 1.0 0.2 21 50 75 104 68 107 0.88

3 13 0.00072 13 7.0 0.1 21 51 132 162 126 166 0.89

4 13 0.51 9.2e+03 -2.1 0.1 23 43 163 183 160 192 0.69

5 13 0.12 2.1e+03 -0.1 0.1 21 51 189 219 179 221 0.84

6 13 0.00072 13 7.0 0.1 21 51 246 276 240 279 0.89

7 13 0.48 8.6e+03 -2.1 0.0 23 44 277 298 274 308 0.70

8 13 0.12 2.2e+03 -0.1 0.1 21 49 303 331 294 336 0.84

9 13 0.58 1e+04 -2.3 0.1 22 43 333 354 322 358 0.78

10 13 4.9e-05 0.88 10.7 0.1 21 51 360 390 349 392 0.87

11 13 2.4e-05 0.44 11.7 0.3 18 51 414 447 399 450 0.82

12 13 5.7e-05 1 10.5 0.3 18 49 471 502 456 507 0.81

13 13 0.0002 3.6 8.8 0.2 18 49 528 559 513 563 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0056	1e+02	4.1	0.9	21	50	18	47	10	50	0.87
2	13	0.054	9.9e+02	1.0	0.2	21	50	75	104	68	107	0.88
3	13	0.00072	13	7.0	0.1	21	51	132	162	126	166	0.89
4	13	0.51	9.2e+03	-2.1	0.1	23	43	163	183	160	192	0.69
5	13	0.12	2.1e+03	-0.1	0.1	21	51	189	219	179	221	0.84
6	13	0.00072	13	7.0	0.1	21	51	246	276	240	279	0.89
7	13	0.48	8.6e+03	-2.1	0.0	23	44	277	298	274	308	0.70
8	13	0.12	2.2e+03	-0.1	0.1	21	49	303	331	294	336	0.84
9	13	0.58	1e+04	-2.3	0.1	22	43	333	354	322	358	0.78
10	13	4.9e-05	0.88	10.7	0.1	21	51	360	390	349	392	0.87
11	13	2.4e-05	0.44	11.7	0.3	18	51	414	447	399	450	0.82
12	13	5.7e-05	1	10.5	0.3	18	49	471	502	456	507	0.81
13	13	0.0002	3.6	8.8	0.2	18	49	528	559	513	563	0.81

Sequence Information

Coding Sequence: ATGGCTTTTAAAACCCGTCAAAGTATGCGGTGTCACGAGCGCACACACACTGGAGAGAAACCGTATCATTGCGAGTTGTGTGATAAAAGATTTTACcataaacaacatttaaaaCGCCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTCGTCTTGTGATAAGGATTTCAAAACCCACTCTGCTATGCAGCAACACGAGCGCTTACATACTGGAGAAAGACCGTACCATTGCGATTTGTGTGATAAAagatttattcaattatttcatttaaaagttCATTTGGATACTACCCACTCAGATAAGAGACCGTTTCCATGTTCGTTTTGTAATAAGGCTTTTAAATCCCGCCAGTATGTGCAGATACACGAGCGCACACACACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGATTTATTCAATCATCTGCTTTGAAAAATCATTTGGATACTACCCACTCAGATAAGAGACCGTTTCCATGTTCGATTTGTGGCAAGGCTTTCAAAATTCGCTCTGATAAGCGGCAACACGAGCGCCTACATACTGGAGAAAGACCGTACAAATGCGAGTTGTGTAAAAGAGAGTTTAATGTTCCATCtcaattaaaaaatcatttgaatACTATCCACTCGAATAAGAATCCATTTCCATGTTCGTTTTGTAATAAGGCTTTTAAATCCCGCCAGTATGTGCAGATACACGAGCGCACACACACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGATTTATTCAATCATCTGCTTTGAAAAATCATTTGGATACTACCCACTCAGATAAGAGACCGTTTCCATGTTCGATTTGTGGCAAGGCTTTCAAAATTCGCTCTGATAAGCGGCAACACGAGCGCCTACATACTGGAGAAAGACCGTACAAATGCGAGTTGTGTAAAAAAGAGTTTAATGTTCCATCtcaattaaaaaatcatttgaatACTATCCACTCGGATAAGAGACCGTTTTCATGTTCGTTTTGTAATATGGCTTTTAAAACCCGCCAAACTATGCGGTGTCACGAGCGCACACACACTGGAGAAAGACCGTACGATTGCCAATTGTGTGATAAAAGATTTAAACAATCTTCTAATTTAAAAAGTCATTTTGATACTACCCACACAGATAAGAGACCGTTTCCATGTTCGTTTTGTGACAAGGCTTTTAAAACCCGCCCTGTTATGCAGAAACACGAGCGCCTACATACTGGAGAAAGACCGTATCATTGCGAGTTGTGTGATAAAAGATTTAATCAATCTAGTATTTTAAAACGTCATTTAGATATCATCCACTCCGATAAAAGACCGTTTCCATGTTCGTTTTGTGATAAGGTTTTCAAAACCCGCCCTGTTATGCAGAAACACGAGCGCGTACATACTGGAGAAAGACCGTATCATTGCGAGATGTGTGATAAAAGATTTAATCAATCTTCTGTTTTAAAAAGGCATTTGGATCATATCCACTCAGATAAAAGACCGTTTCCATGTTCGTTTTGTGATAAGGTTTTCAAAACCCGCCCTGTTATGCAGAAACACGAGCGCGTACATACTGGAGAAAGACCGTATCATTGCGAGTTGtgtgataaaaaatttaaacaatctTCTAGTTTAAAAAGTCATTTAGATCATATCCACTCAGATAAAATACCGTTTCCATGTTCGTTTTGTGACAAGGCTTTTAAAACCCGCCAAATTATGCAGCGACACGAGCGCACCGCACACACAGCGGAGAAAGATCGTACCATTGCGAGTTGTGTTTaa
Protein Sequence: MAFKTRQSMRCHERTHTGEKPYHCELCDKRFYHKQHLKRHLDTIHSDKRPFPCSSCDKDFKTHSAMQQHERLHTGERPYHCDLCDKRFIQLFHLKVHLDTTHSDKRPFPCSFCNKAFKSRQYVQIHERTHTGERPYHCELCDKRFIQSSALKNHLDTTHSDKRPFPCSICGKAFKIRSDKRQHERLHTGERPYKCELCKREFNVPSQLKNHLNTIHSNKNPFPCSFCNKAFKSRQYVQIHERTHTGERPYHCELCDKRFIQSSALKNHLDTTHSDKRPFPCSICGKAFKIRSDKRQHERLHTGERPYKCELCKKEFNVPSQLKNHLNTIHSDKRPFSCSFCNMAFKTRQTMRCHERTHTGERPYDCQLCDKRFKQSSNLKSHFDTTHTDKRPFPCSFCDKAFKTRPVMQKHERLHTGERPYHCELCDKRFNQSSILKRHLDIIHSDKRPFPCSFCDKVFKTRPVMQKHERVHTGERPYHCEMCDKRFNQSSVLKRHLDHIHSDKRPFPCSFCDKVFKTRPVMQKHERVHTGERPYHCELCDKKFKQSSSLKSHLDHIHSDKIPFPCSFCDKAFKTRQIMQRHERTAHTAEKDRTIASCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00035926;
90% Identity: iTF_00035926;
80% Identity: iTF_00035926;