Astr023799.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agriphila straminella
Gene Symbol
Kr
Assembly
GCA_950108535.1
Location
OX467320.1:4515870-4517669[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00013 0.012 17.0 7.9 1 23 22 45 22 45 0.97
2 20 0.00028 0.025 16.0 2.1 1 23 51 73 51 73 0.97
3 20 0.00016 0.015 16.7 4.1 1 23 79 102 79 102 0.97
4 20 8.2e-05 0.0075 17.6 1.5 1 23 108 130 108 130 0.98
5 20 4.9e-06 0.00045 21.5 1.8 1 23 136 159 136 159 0.97
6 20 0.00012 0.011 17.1 0.5 1 23 165 187 165 187 0.97
7 20 3e-06 0.00027 22.2 0.6 1 23 193 216 193 216 0.98
8 20 8.2e-05 0.0075 17.6 1.5 1 23 222 244 222 244 0.98
9 20 4.9e-06 0.00045 21.5 1.8 1 23 250 273 250 273 0.97
10 20 0.00012 0.011 17.1 0.5 1 23 279 301 279 301 0.97
11 20 1.3e-06 0.00012 23.3 0.7 1 23 307 330 307 330 0.98
12 20 0.22 20 6.9 5.6 1 23 336 358 336 358 0.97
13 20 5.5e-06 0.0005 21.3 2.6 1 23 364 387 364 387 0.95
14 20 0.00029 0.026 15.9 0.8 1 23 393 415 393 415 0.97
15 20 0.00016 0.014 16.8 1.5 1 23 421 444 421 444 0.95
16 20 8.2e-05 0.0075 17.6 0.7 1 23 450 472 450 472 0.98
17 20 0.0001 0.0093 17.3 3.8 1 23 478 501 478 501 0.93
18 20 8.2e-05 0.0075 17.6 0.7 1 23 507 529 507 529 0.98
19 20 4.5e-05 0.0041 18.5 4.7 1 23 535 558 535 558 0.93
20 20 0.00051 0.047 15.1 1.0 1 23 564 587 564 587 0.97

Sequence Information

Coding Sequence
ATGGCTTTTAAAACCCGTCAAAGTATGCGGTGTCACGAGCGCACACACACTGGAGAGAAACCGTATCATTGCGAGTTGTGTGATAAAAGATTTTACcataaacaacatttaaaaCGCCATTTGGATACTATCCACTCAGATAAGAGACCGTTTCCATGTTCGTCTTGTGATAAGGATTTCAAAACCCACTCTGCTATGCAGCAACACGAGCGCTTACATACTGGAGAAAGACCGTACCATTGCGATTTGTGTGATAAAagatttattcaattatttcatttaaaagttCATTTGGATACTACCCACTCAGATAAGAGACCGTTTCCATGTTCGTTTTGTAATAAGGCTTTTAAATCCCGCCAGTATGTGCAGATACACGAGCGCACACACACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGATTTATTCAATCATCTGCTTTGAAAAATCATTTGGATACTACCCACTCAGATAAGAGACCGTTTCCATGTTCGATTTGTGGCAAGGCTTTCAAAATTCGCTCTGATAAGCGGCAACACGAGCGCCTACATACTGGAGAAAGACCGTACAAATGCGAGTTGTGTAAAAGAGAGTTTAATGTTCCATCtcaattaaaaaatcatttgaatACTATCCACTCGAATAAGAATCCATTTCCATGTTCGTTTTGTAATAAGGCTTTTAAATCCCGCCAGTATGTGCAGATACACGAGCGCACACACACTGGAGAAAGACCGTACCATTGCGAGTTGTGTGATAAAAGATTTATTCAATCATCTGCTTTGAAAAATCATTTGGATACTACCCACTCAGATAAGAGACCGTTTCCATGTTCGATTTGTGGCAAGGCTTTCAAAATTCGCTCTGATAAGCGGCAACACGAGCGCCTACATACTGGAGAAAGACCGTACAAATGCGAGTTGTGTAAAAAAGAGTTTAATGTTCCATCtcaattaaaaaatcatttgaatACTATCCACTCGGATAAGAGACCGTTTTCATGTTCGTTTTGTAATATGGCTTTTAAAACCCGCCAAACTATGCGGTGTCACGAGCGCACACACACTGGAGAAAGACCGTACGATTGCCAATTGTGTGATAAAAGATTTAAACAATCTTCTAATTTAAAAAGTCATTTTGATACTACCCACACAGATAAGAGACCGTTTCCATGTTCGTTTTGTGACAAGGCTTTTAAAACCCGCCCTGTTATGCAGAAACACGAGCGCCTACATACTGGAGAAAGACCGTATCATTGCGAGTTGTGTGATAAAAGATTTAATCAATCTAGTATTTTAAAACGTCATTTAGATATCATCCACTCCGATAAAAGACCGTTTCCATGTTCGTTTTGTGATAAGGTTTTCAAAACCCGCCCTGTTATGCAGAAACACGAGCGCGTACATACTGGAGAAAGACCGTATCATTGCGAGATGTGTGATAAAAGATTTAATCAATCTTCTGTTTTAAAAAGGCATTTGGATCATATCCACTCAGATAAAAGACCGTTTCCATGTTCGTTTTGTGATAAGGTTTTCAAAACCCGCCCTGTTATGCAGAAACACGAGCGCGTACATACTGGAGAAAGACCGTATCATTGCGAGTTGtgtgataaaaaatttaaacaatctTCTAGTTTAAAAAGTCATTTAGATCATATCCACTCAGATAAAATACCGTTTCCATGTTCGTTTTGTGACAAGGCTTTTAAAACCCGCCAAATTATGCAGCGACACGAGCGCACCGCACACACAGCGGAGAAAGATCGTACCATTGCGAGTTGTGTTTaa
Protein Sequence
MAFKTRQSMRCHERTHTGEKPYHCELCDKRFYHKQHLKRHLDTIHSDKRPFPCSSCDKDFKTHSAMQQHERLHTGERPYHCDLCDKRFIQLFHLKVHLDTTHSDKRPFPCSFCNKAFKSRQYVQIHERTHTGERPYHCELCDKRFIQSSALKNHLDTTHSDKRPFPCSICGKAFKIRSDKRQHERLHTGERPYKCELCKREFNVPSQLKNHLNTIHSNKNPFPCSFCNKAFKSRQYVQIHERTHTGERPYHCELCDKRFIQSSALKNHLDTTHSDKRPFPCSICGKAFKIRSDKRQHERLHTGERPYKCELCKKEFNVPSQLKNHLNTIHSDKRPFSCSFCNMAFKTRQTMRCHERTHTGERPYDCQLCDKRFKQSSNLKSHFDTTHTDKRPFPCSFCDKAFKTRPVMQKHERLHTGERPYHCELCDKRFNQSSILKRHLDIIHSDKRPFPCSFCDKVFKTRPVMQKHERVHTGERPYHCEMCDKRFNQSSVLKRHLDHIHSDKRPFPCSFCDKVFKTRPVMQKHERVHTGERPYHCELCDKKFKQSSSLKSHLDHIHSDKIPFPCSFCDKAFKTRQIMQRHERTAHTAEKDRTIASCV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00036285;
90% Identity
iTF_00036285;
80% Identity
iTF_00036285;