Agen010971.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000135.1:194830-195183[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.043 39 5.8 0.0 24 36 15 27 15 33 0.87 2 4 0.043 39 5.8 0.0 24 36 37 49 37 55 0.87 3 4 0.043 39 5.8 0.0 24 36 59 71 59 77 0.87 4 4 0.043 39 5.8 0.0 24 36 81 93 81 99 0.87
Sequence Information
- Coding Sequence
- ATGATACGACGCGCCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGCATCAGACGATACGACGTGTCGTATTCTGATGCGACGAGTCGCACTAGTTGATACGACGTGTTCCATCAGATGA
- Protein Sequence
- MIRRAASDDTTCRIRRYDVSHQTIRRVASDDTTCRIRRYDVSHQTIRRVASDDTTCRIRRYDVSHQTIRRVASDDTTCRIRRYDVSHQTIRRVASDDTTCRILMRRVALVDTTCSIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00034642; iTF_00034680;
- 90% Identity
- iTF_00034642; iTF_00034680;
- 80% Identity
- -