Agen009725.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- lov
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000119.1:1424590-1436001[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-18 3.8e-15 57.1 0.0 1 44 106 149 106 150 0.96
Sequence Information
- Coding Sequence
- ATGCGCACCTTCAACCCTCACAACCCGTCCGCGATGCGAGTCACCCAACCCCGACCACAACCGAACACCCTTCAGCCGCTCACCTCTCGCCGGGTTATACGGATCACGCACGCAGCGAGACACAACAGCACATTGTTCGGCATCGACTCCCCCCTAGGGCTGTTCCCGCCGGGCATGGAACACAAAATGTACCCGATGATGGACGTGGACCACCGCGCGCCGCCCCTGGACGCCCAACTATTTACCAACGTTAAAAAGAAATGGAGACCGAAAGGCCAACACAGCGCGCCGCGTGGCGGCCCACCTCGATCATGGACCAACGCAGAACTCACGGAGGCGCTGCAGCACGTGTGGAACAAGAAGATGACCACGAGTCAGGCTTCCAGGATCTTCGGCATCCCATACAACTCGCTGCTCATGTACGTGCGGGGCAAATACGGCAAGAGCCTCAAACTGGAGCAGCTCAGGAAAGACTGCATCGGGGGGCCACTTGACGTACTGAATATGAACTCCGGGAACAATAACAACAACCATCCGCCCAATAAACACCAACACCACGACAAAGAAGACCACCAGAACGCCAGCCAAAGACCGGCCAGCTCGGAGCCAGACATCGCTTCGAATCCGATGTTCAATCCGTTCTCACAAGGGTTCTACCCGGAGTTCCCGCCCGGATTCCCGATGCCGCTGAACATGCTTCACCTTCTGCCACCAAACGAGAAAGCGAGAGAGCTATACCAGTCGATGCCGATGGCGTTAGATTCTCTGTCAGGAGTGACCAAGGAGGAGGACTGCAAGAGTGATAGGTCAAAGGAGAACTCTGCGGACGAGGAGGGCGACGCGTATCGCGCGCCCTCGCACCCCCCGCACCCGCCTGACAACCGCACGCTCCTTCACCACAACGGACAGGACTAA
- Protein Sequence
- MRTFNPHNPSAMRVTQPRPQPNTLQPLTSRRVIRITHAARHNSTLFGIDSPLGLFPPGMEHKMYPMMDVDHRAPPLDAQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDVLNMNSGNNNNNHPPNKHQHHDKEDHQNASQRPASSEPDIASNPMFNPFSQGFYPEFPPGFPMPLNMLHLLPPNEKARELYQSMPMALDSLSGVTKEEDCKSDRSKENSADEEGDAYRAPSHPPHPPDNRTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264319;
- 90% Identity
- iTF_00162429;
- 80% Identity
- -