Basic Information

Insect: Agriopis leucophaearia
Gene Symbol: -
Assembly: GCA_949125355.1
Location: OX421272.1:5573693-5615612[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.9e-05 0.0021 19.0 2.2 1 23 400 422 400 422 0.97

2 18 0.0025 0.19 12.9 0.9 1 20 428 447 428 450 0.94

3 18 2.2e-05 0.0016 19.4 5.6 1 23 469 491 469 491 0.98

4 18 0.0001 0.0076 17.3 4.1 1 23 497 519 497 519 0.99

5 18 3.9e-05 0.0029 18.6 5.3 1 23 525 547 525 547 0.97

6 18 0.00011 0.0079 17.2 6.7 1 23 553 575 553 575 0.97

7 18 0.00011 0.0078 17.3 6.5 1 23 581 603 581 603 0.97

8 18 5.2e-07 3.8e-05 24.5 1.9 1 23 609 631 609 631 0.98

9 18 5.3e-05 0.0039 18.2 7.9 1 23 637 659 637 659 0.98

10 18 2.7e-05 0.002 19.1 6.6 1 23 665 687 665 687 0.98

11 18 7.6e-06 0.00056 20.9 4.1 1 23 693 715 693 715 0.98

12 18 8.7e-06 0.00064 20.7 5.0 1 23 721 743 721 743 0.96

13 18 1.2e-05 0.00085 20.3 5.2 1 23 749 771 749 771 0.98

14 18 3.2e-06 0.00024 22.0 6.0 1 23 777 799 777 799 0.98

15 18 9.5e-05 0.0069 17.4 7.7 1 23 805 827 805 827 0.97

16 18 2e-06 0.00015 22.7 5.2 1 23 833 855 833 855 0.98

17 18 0.00035 0.026 15.6 0.3 1 23 862 884 862 884 0.97

18 18 0.028 2.1 9.6 5.4 1 23 893 915 893 915 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.9e-05	0.0021	19.0	2.2	1	23	400	422	400	422	0.97
2	18	0.0025	0.19	12.9	0.9	1	20	428	447	428	450	0.94
3	18	2.2e-05	0.0016	19.4	5.6	1	23	469	491	469	491	0.98
4	18	0.0001	0.0076	17.3	4.1	1	23	497	519	497	519	0.99
5	18	3.9e-05	0.0029	18.6	5.3	1	23	525	547	525	547	0.97
6	18	0.00011	0.0079	17.2	6.7	1	23	553	575	553	575	0.97
7	18	0.00011	0.0078	17.3	6.5	1	23	581	603	581	603	0.97
8	18	5.2e-07	3.8e-05	24.5	1.9	1	23	609	631	609	631	0.98
9	18	5.3e-05	0.0039	18.2	7.9	1	23	637	659	637	659	0.98
10	18	2.7e-05	0.002	19.1	6.6	1	23	665	687	665	687	0.98
11	18	7.6e-06	0.00056	20.9	4.1	1	23	693	715	693	715	0.98
12	18	8.7e-06	0.00064	20.7	5.0	1	23	721	743	721	743	0.96
13	18	1.2e-05	0.00085	20.3	5.2	1	23	749	771	749	771	0.98
14	18	3.2e-06	0.00024	22.0	6.0	1	23	777	799	777	799	0.98
15	18	9.5e-05	0.0069	17.4	7.7	1	23	805	827	805	827	0.97
16	18	2e-06	0.00015	22.7	5.2	1	23	833	855	833	855	0.98
17	18	0.00035	0.026	15.6	0.3	1	23	862	884	862	884	0.97
18	18	0.028	2.1	9.6	5.4	1	23	893	915	893	915	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCACCACAATATCAATCCGGGTGGTGGTCAGCCTCCTGGGAGTTCAGAGCCACAAGGGCAGAGAGTGCAGGCTTCACAACAACAGCAGCAAGTAAGCTTGCCTGCGACGACATCTGCTACGGATTTACGAGTGAATACAGCAGCTGTAAATGTAGCTTTGTCCAGTGTAGCAAAGTATTGGGTATTTACGAATTTATTCCCTGGACCAATCCCACAAGTCTCTGTTTATGGATTACCCACTGGAACTAGAATTGAAAACGGAAAACCTGTACagGACATTCAACATGCGAGCATACTGAATGGTGACCCGAATATCATCCTGGGACACCATGGTGGACAGCCACAGGTCACCGTCTCCGCGGGCGCCCAGCAGATACCTGTATCACAGATCATTGCTACACAGTCAGGGCAGACACATGAAGCGCTGGTTGCTCACAGCCAGGAGCTGGCGCAGCAGGCCGCAGGAGGCTCCCAGGTTTCTGTCGCCGGCCAGGCAACCCACCAGCAGGGTCATCATTCTCAACAACACATTTTGCAACAGCAGCTCATGACAGCGCGCCCTGACCACAACAATCAACAGATCCAGCTGACGGTCAGTGAAGATGGCATCGTGACTGTCGTCGAGCCAGGCAACAGTAAGATGGTCGACAAGGAAGAACTGCATGAGACCATCAAACTACCGTCCGACCATCCCTTGACGATCCACCAGTTGCAGCAGATTGTAGGCCAACAGCTGGGTACACAAGTACTAGAAAACGTAGTGCGCATAGAGCAAGCCACGGGCGAGCCAGCCAATATTCTCGTGACACACAATGCTGATGGGACCACGTCTATCGAAGCAAGTGCCTCTGATCCGCTTGCCATCGTAAAGGACGAGAAGACACAGGGAAAAATGGACACCACACAATTTGCTATACCTACCGAAATTAAGGACATTAAAGGCATTGATTTGAAGAGTGTGGGAGCGATGGGTATGGAAGGTGCAGTTGTAAAGATATCACCCGCAGCGGACCATGACATGACAGCAATGTACAAAGTTAACGTGGAAGACCTGTCGCAGCTGCTGGCATATCACGAAGTCTTTGGGAAGCTTAACACTGATGGCCAGACGCAAAACAAAgCTGAATTGGAAATTGAAGTGCCAGGATCTAGCCAGATGTCGGAAGCGGAATCGTCGCCCGGACACCATTCTTGTGATATCTGCGGAAAAGTGTTCCAGTTCCGGTATCAACTCATTGTTCACAGACGATATCATGGCGAAAGCAAACCTTACAGTTGTCAAGTCTGCGGTTCGTCATTTGCCAACCCCGTTGAATTATCACGCCACGGGAAATGCCATCTTGcCGGTGATCCAGTGGAGAGACACGCCAAGAGGATAGCCCAGGACAAACCTTACGCCTGCACAACTTGCCATAAAACATTCTCCCGTAAAGAACATCTCGACAACCATGTTCGGAGCCACACTGGAGAAACGCCCTACAGATGTGAGTTCTGCGCGAAAACGTTTACACGCAAGGAGCACATGGTAAATCATGTGAGAAAACACACGGGCGAAACGCCACATCGCTGTGACATCTGCAAGAAGAGCTTCACCAGAAAAGAACACTTCATGAACCACGTCATGTGGCATACAGGCGAGACCCCCCACCGTTGTGACTTCTGTTCAAAAACCTTCACCCGCAAAGAACACCTACTAAACCATGTTCGACAACACACGGGCGAGTCTCCTCACCGCTGCAACTTCTGTTCCAAGTCGTTCACGAGACGCGAGCACCTCGTGAACCACGTCCGGCAACACACTGGAGAGACGCCCTTCCAGTGTGGGTACTGCCCCAAGGCGTTCACTAGGAAGGACCATCTCGTGAACCACGTTCGACAACACACCGGGGAGTCCCCTCACAAATGTTCGTTCTGCACGAAGTCGTTTACCCGCAAGGAGCACCTCACGAACCACGTTCGTCAGCACACGGGCGAGTCGCCGCATCGCTGCACTTACTGCGCCAAGTCGTTCACTAGGAAAGAGCATCTTACTAACCATGTCAGACAGCACACGGGCGAAACGCCACACAAGTGCGCGTACTGCCCACGCGCATTCTCGCGCAAGGAGCACCTCAACAACCACGTGAGGCAACACACCGGCGTCACGCCGCACGCCTGCTCGTATTGCAACAAGAGCTTCACGAGGAAGGAGCATCTCGTCAACCATGTCAGGCAACACACGGGCGAAACTCCGTTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCTCGCAAGGAGCACCTCACTAACCACGTGAACCTGCACACTGGAGAGACGCCGCATAAGTGTCCCTTCTGCACTAAAACATTCTCCAGGAAAGAACATCTCACCAATCACGTCAGaattcaCACGGGCGAATCACCGCACCGCTGTGACTTCTGCCAGAAGACTTTCACGCGCAGAGAGCATCTCACCAACCACCTGAAACAACATACGGGCGACGCCGCGCACACCTGCAAAATTTGCTCCAAGCCTTTCACGAGGAAAGAACATTTGGTTACCCATATGAGATCTCACAGTTGCGGTGAAAAGCCGTACAGTTGCGGCGAATGCGGCAAGTCGTTCCCGTTGAAAGGCAACTTGATGTTCCACGAGCGATCGCACCAGAAGGGCGGCGGCGCGCGCCCCTTCCGCTGTGATGTCTGCTCTAAGGACTTCATGTGCAAAGGTCATTTGATTTCGCACCGTCGCACACACGCGGATGCAGGCGCGACGCCTGCGACGGAGGCGCGCCCCGCGTCAGAGGATTGTACCACAAAGTGCGTCAAAGTGGAAGCTGACCCTCTCGCACTCGATAGCAAACCTAAACTGGCGGTAGCGTCACCAGAACAAGAAACTATGCTCCTGCAGTCCCCTATTCTCATGCCCAGCATAGAAACTATCGACACAACCTCGCATGGAAAGTCCTACGGTGCTGAAATTTGGACATTTACATTAAGAGCTGTCCACAAGTTCCAAGTCAAGTTCCAGGTTGCTCAGCAAGCTATAAAGAGCTATGCTTCACACTAG
Protein Sequence: MNPDHHNINPGGGQPPGSSEPQGQRVQASQQQQQVSLPATTSATDLRVNTAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDIQHASILNGDPNIILGHHGGQPQVTVSAGAQQIPVSQIIATQSGQTHEALVAHSQELAQQAAGGSQVSVAGQATHQQGHHSQQHILQQQLMTARPDHNNQQIQLTVSEDGIVTVVEPGNSKMVDKEELHETIKLPSDHPLTIHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQGKMDTTQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISPAADHDMTAMYKVNVEDLSQLLAYHEVFGKLNTDGQTQNKAELEIEVPGSSQMSEAESSPGHHSCDICGKVFQFRYQLIVHRRYHGESKPYSCQVCGSSFANPVELSRHGKCHLAGDPVERHAKRIAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCAYCPRAFSRKEHLNNHVRQHTGVTPHACSYCNKSFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRREHLTNHLKQHTGDAAHTCKICSKPFTRKEHLVTHMRSHSCGEKPYSCGECGKSFPLKGNLMFHERSHQKGGGARPFRCDVCSKDFMCKGHLISHRRTHADAGATPATEARPASEDCTTKCVKVEADPLALDSKPKLAVASPEQETMLLQSPILMPSIETIDTTSHGKSYGAEIWTFTLRAVHKFQVKFQVAQQAIKSYASH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00634709;
90% Identity: iTF_00635599;
80% Identity: -