Amal030260.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- -
- Assembly
- GCA_029378335.1
- Location
- CM055663.1:13266403-13268157[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0042 77 4.5 0.0 22 46 19 43 12 49 0.84 2 13 0.00063 12 7.1 0.0 21 44 74 97 71 105 0.88 3 13 0.012 2.2e+02 3.1 0.0 21 46 102 127 97 131 0.90 4 13 1.1 2e+04 -3.2 0.0 18 30 235 248 232 250 0.72 5 13 0.0019 35 5.6 0.0 20 47 266 293 259 300 0.82 6 13 0.25 4.6e+03 -1.1 0.0 21 31 323 333 315 342 0.84 7 13 0.3 5.6e+03 -1.4 0.0 22 45 380 403 377 407 0.81 8 13 0.00067 12 7.1 0.0 21 52 407 438 402 440 0.89 9 13 0.078 1.5e+03 0.5 0.1 21 44 435 458 433 467 0.80 10 13 0.19 3.6e+03 -0.8 0.1 22 48 464 490 460 496 0.78 11 13 0.12 2.2e+03 -0.1 0.5 20 44 490 514 471 518 0.76 12 13 0.00027 5 8.4 0.0 21 46 519 544 514 547 0.91 13 13 0.012 2.3e+02 3.1 0.8 21 52 547 578 544 579 0.90
Sequence Information
- Coding Sequence
- ATGAGCTTAACACAAAAGTGTAATTTAGATGTTCATATGGAAACTAAATCGGAGAAACAGCCATTCGAATGtgatatttgtaaaaaaatatttatacaaaaaggTCATTTAAATGTTCACATGAAAATCCATTCGGGCGAGAAGTCGTTTAAATGCGAAATCTGCAAGAAAGGATTCTCAATAAAGAGTCATTTAAATGTTCACATGAAAATTCATTTGAGCGAGAAGCCATTCAAATGTGAGATCTGCGACAAAAGCTTCTCACAAAagagcaatttaaaaacccacaGGATAATCCATACAGGCGAAAAGCCCTTCAAATGTGAAGACTGCATGAAGAGCTTCTCACAAAAGTGTAACTTAAAAACTCATATGAAAATCCATTTAAAAACGAATGAAAGTTGTGAAACTAGTAATAAAAGCTTCTCACAAAAGtgtaacttaaatacttacaCGGAAACTGATTTACACAACGATCCACTCAAATCTGAAATTTTAGCAAATTGTTTTTCTCATGAGAGCATCTTGAATCAATCCATGCGAACCTATTCGGAGAAGTCATTCAAATCCGAAGGTTGTGAAAAAGACATTACACAAATTGGTAATTTAGATACTCACATGACCAGTTTGGACGAGAAGCCTTTCAAATGTGAAGAATGCAAAAAAAGCTTTTCACAaaaggtttatttaaattttcatagaAGATCCCATAGTGGTGAGAAGCCATTTCAGTGTGAATATTGCAAAAAGCGCTTCACATTAAAGatgtatttaaatatgcaCAGAAAGACTCATACGGAGGAAAAGCCTTTCGAATGCAAAGTCTGTATGAAAAGTTTTGCCCAAAAGAGTAATTTAAATGTTCACATGAAATCTCATTTAACCGAGAAACCGTTCATATGCGAAACCTGCAAGAAAAGTTTTACACTAAAGAATGCTTTAATTAGGCATAAGAAAATTCATTCGGGGGAGAAGCCATTCAAATGCGATATCTGCAATAAAGGCTTTTTACGAAAGAATACCTTAGATGTTCACAGGAATGCTCATACTGGTGAAAAGCTATTTCAATGCAAACATTGCAATAAATGTTACACACGATTGGTTTCATtaaatgtacatataaaaacCCATACGGGCGAAAGGCCTTTCAAATGCCAAACCTGCATGAAAAGCTTCGcagtaaaaagtaatttaaatgttCACATGAAAATCCATACAGGCGAGAAGCCGTTCATATGCAAAATCTGTGAAAAGGGTTTCTCGCaaaggagtaatttaaaaattcacatGAAGGTCCATTTATGTGAGAAGCCGTTTATTTGCGAAATTTGTCAAAAACAATTCAAGCGAAAGAATAGCCTAAATATTCACATGTTAATCCATGCAAAGGAGAGGCCGTTCGAATGCGAAGTCTGCGCTAGGCGTTTCTCTCACAAGACCAGCTTTAATCGACATGTACAAATACATTTAAGCGAGAAGCCGTTCCAATGTGAAACCTGTAATAGAAGCTTTGcacaaaagaatattttacatGTTCACATGAGAACCCATTTAAGCGAAAAGCCATTCCATTGCGAAATCTGCAAGAAAAGCTTCGCACAAAAGTACAATTTAAAACTTCACATGAAAATCCATTCAAATGAAAGGCCTTTCAAATGTGAAAGTTGTGAAGTGTGCTTCTCTCACAAAACTAGTTTGCAACGACATATGCAAATCCATTTATACCCAAAGCCCTTCAAATGCGAAACGTTTTAA
- Protein Sequence
- MSLTQKCNLDVHMETKSEKQPFECDICKKIFIQKGHLNVHMKIHSGEKSFKCEICKKGFSIKSHLNVHMKIHLSEKPFKCEICDKSFSQKSNLKTHRIIHTGEKPFKCEDCMKSFSQKCNLKTHMKIHLKTNESCETSNKSFSQKCNLNTYTETDLHNDPLKSEILANCFSHESILNQSMRTYSEKSFKSEGCEKDITQIGNLDTHMTSLDEKPFKCEECKKSFSQKVYLNFHRRSHSGEKPFQCEYCKKRFTLKMYLNMHRKTHTEEKPFECKVCMKSFAQKSNLNVHMKSHLTEKPFICETCKKSFTLKNALIRHKKIHSGEKPFKCDICNKGFLRKNTLDVHRNAHTGEKLFQCKHCNKCYTRLVSLNVHIKTHTGERPFKCQTCMKSFAVKSNLNVHMKIHTGEKPFICKICEKGFSQRSNLKIHMKVHLCEKPFICEICQKQFKRKNSLNIHMLIHAKERPFECEVCARRFSHKTSFNRHVQIHLSEKPFQCETCNRSFAQKNILHVHMRTHLSEKPFHCEICKKSFAQKYNLKLHMKIHSNERPFKCESCEVCFSHKTSLQRHMQIHLYPKPFKCETF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032209;
- 90% Identity
- iTF_00032209;
- 80% Identity
- iTF_00032209;