Basic Information

Insect: Agrilus mali
Gene Symbol: -
Assembly: GCA_029378335.1
Location: CM055663.1:13266403-13268157[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.9e-07 2.8e-05 25.3 1.1 1 23 22 44 22 44 0.98

2 17 6.5e-07 6.3e-05 24.2 2.2 1 23 50 72 50 72 0.99

3 17 1.4e-08 1.3e-06 29.5 1.6 1 23 78 100 78 100 0.98

4 17 7.2e-06 0.0007 20.9 5.1 1 23 106 128 106 128 0.99

5 17 8e-05 0.0078 17.6 3.8 1 23 215 237 215 237 0.98

6 17 6.2e-05 0.006 18.0 4.6 1 23 243 265 243 265 0.99

7 17 6.4e-07 6.2e-05 24.2 1.2 1 23 271 293 271 293 0.98

8 17 3.7e-05 0.0036 18.7 1.4 1 23 299 321 299 321 0.97

9 17 0.0018 0.18 13.3 0.7 1 23 327 349 327 349 0.97

10 17 5.4e-06 0.00053 21.3 6.3 1 23 355 377 355 377 0.99

11 17 6.1e-06 0.0006 21.1 1.2 1 23 383 405 383 405 0.99

12 17 4.6e-08 4.5e-06 27.8 0.8 1 23 411 433 411 433 0.98

13 17 1.2e-06 0.00011 23.4 0.8 1 23 439 461 439 461 0.97

14 17 8.8e-05 0.0086 17.5 2.6 1 23 467 489 467 489 0.98

15 17 5.4e-05 0.0053 18.2 2.7 1 23 495 517 495 517 0.99

16 17 3.5e-07 3.4e-05 25.0 3.5 1 23 523 545 523 545 0.98

17 17 3.4e-05 0.0033 18.8 5.6 1 23 551 573 551 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.9e-07	2.8e-05	25.3	1.1	1	23	22	44	22	44	0.98
2	17	6.5e-07	6.3e-05	24.2	2.2	1	23	50	72	50	72	0.99
3	17	1.4e-08	1.3e-06	29.5	1.6	1	23	78	100	78	100	0.98
4	17	7.2e-06	0.0007	20.9	5.1	1	23	106	128	106	128	0.99
5	17	8e-05	0.0078	17.6	3.8	1	23	215	237	215	237	0.98
6	17	6.2e-05	0.006	18.0	4.6	1	23	243	265	243	265	0.99
7	17	6.4e-07	6.2e-05	24.2	1.2	1	23	271	293	271	293	0.98
8	17	3.7e-05	0.0036	18.7	1.4	1	23	299	321	299	321	0.97
9	17	0.0018	0.18	13.3	0.7	1	23	327	349	327	349	0.97
10	17	5.4e-06	0.00053	21.3	6.3	1	23	355	377	355	377	0.99
11	17	6.1e-06	0.0006	21.1	1.2	1	23	383	405	383	405	0.99
12	17	4.6e-08	4.5e-06	27.8	0.8	1	23	411	433	411	433	0.98
13	17	1.2e-06	0.00011	23.4	0.8	1	23	439	461	439	461	0.97
14	17	8.8e-05	0.0086	17.5	2.6	1	23	467	489	467	489	0.98
15	17	5.4e-05	0.0053	18.2	2.7	1	23	495	517	495	517	0.99
16	17	3.5e-07	3.4e-05	25.0	3.5	1	23	523	545	523	545	0.98
17	17	3.4e-05	0.0033	18.8	5.6	1	23	551	573	551	573	0.98

Sequence Information

Coding Sequence: ATGAGCTTAACACAAAAGTGTAATTTAGATGTTCATATGGAAACTAAATCGGAGAAACAGCCATTCGAATGtgatatttgtaaaaaaatatttatacaaaaaggTCATTTAAATGTTCACATGAAAATCCATTCGGGCGAGAAGTCGTTTAAATGCGAAATCTGCAAGAAAGGATTCTCAATAAAGAGTCATTTAAATGTTCACATGAAAATTCATTTGAGCGAGAAGCCATTCAAATGTGAGATCTGCGACAAAAGCTTCTCACAAAagagcaatttaaaaacccacaGGATAATCCATACAGGCGAAAAGCCCTTCAAATGTGAAGACTGCATGAAGAGCTTCTCACAAAAGTGTAACTTAAAAACTCATATGAAAATCCATTTAAAAACGAATGAAAGTTGTGAAACTAGTAATAAAAGCTTCTCACAAAAGtgtaacttaaatacttacaCGGAAACTGATTTACACAACGATCCACTCAAATCTGAAATTTTAGCAAATTGTTTTTCTCATGAGAGCATCTTGAATCAATCCATGCGAACCTATTCGGAGAAGTCATTCAAATCCGAAGGTTGTGAAAAAGACATTACACAAATTGGTAATTTAGATACTCACATGACCAGTTTGGACGAGAAGCCTTTCAAATGTGAAGAATGCAAAAAAAGCTTTTCACAaaaggtttatttaaattttcatagaAGATCCCATAGTGGTGAGAAGCCATTTCAGTGTGAATATTGCAAAAAGCGCTTCACATTAAAGatgtatttaaatatgcaCAGAAAGACTCATACGGAGGAAAAGCCTTTCGAATGCAAAGTCTGTATGAAAAGTTTTGCCCAAAAGAGTAATTTAAATGTTCACATGAAATCTCATTTAACCGAGAAACCGTTCATATGCGAAACCTGCAAGAAAAGTTTTACACTAAAGAATGCTTTAATTAGGCATAAGAAAATTCATTCGGGGGAGAAGCCATTCAAATGCGATATCTGCAATAAAGGCTTTTTACGAAAGAATACCTTAGATGTTCACAGGAATGCTCATACTGGTGAAAAGCTATTTCAATGCAAACATTGCAATAAATGTTACACACGATTGGTTTCATtaaatgtacatataaaaacCCATACGGGCGAAAGGCCTTTCAAATGCCAAACCTGCATGAAAAGCTTCGcagtaaaaagtaatttaaatgttCACATGAAAATCCATACAGGCGAGAAGCCGTTCATATGCAAAATCTGTGAAAAGGGTTTCTCGCaaaggagtaatttaaaaattcacatGAAGGTCCATTTATGTGAGAAGCCGTTTATTTGCGAAATTTGTCAAAAACAATTCAAGCGAAAGAATAGCCTAAATATTCACATGTTAATCCATGCAAAGGAGAGGCCGTTCGAATGCGAAGTCTGCGCTAGGCGTTTCTCTCACAAGACCAGCTTTAATCGACATGTACAAATACATTTAAGCGAGAAGCCGTTCCAATGTGAAACCTGTAATAGAAGCTTTGcacaaaagaatattttacatGTTCACATGAGAACCCATTTAAGCGAAAAGCCATTCCATTGCGAAATCTGCAAGAAAAGCTTCGCACAAAAGTACAATTTAAAACTTCACATGAAAATCCATTCAAATGAAAGGCCTTTCAAATGTGAAAGTTGTGAAGTGTGCTTCTCTCACAAAACTAGTTTGCAACGACATATGCAAATCCATTTATACCCAAAGCCCTTCAAATGCGAAACGTTTTAA
Protein Sequence: MSLTQKCNLDVHMETKSEKQPFECDICKKIFIQKGHLNVHMKIHSGEKSFKCEICKKGFSIKSHLNVHMKIHLSEKPFKCEICDKSFSQKSNLKTHRIIHTGEKPFKCEDCMKSFSQKCNLKTHMKIHLKTNESCETSNKSFSQKCNLNTYTETDLHNDPLKSEILANCFSHESILNQSMRTYSEKSFKSEGCEKDITQIGNLDTHMTSLDEKPFKCEECKKSFSQKVYLNFHRRSHSGEKPFQCEYCKKRFTLKMYLNMHRKTHTEEKPFECKVCMKSFAQKSNLNVHMKSHLTEKPFICETCKKSFTLKNALIRHKKIHSGEKPFKCDICNKGFLRKNTLDVHRNAHTGEKLFQCKHCNKCYTRLVSLNVHIKTHTGERPFKCQTCMKSFAVKSNLNVHMKIHTGEKPFICKICEKGFSQRSNLKIHMKVHLCEKPFICEICQKQFKRKNSLNIHMLIHAKERPFECEVCARRFSHKTSFNRHVQIHLSEKPFQCETCNRSFAQKNILHVHMRTHLSEKPFHCEICKKSFAQKYNLKLHMKIHSNERPFKCESCEVCFSHKTSLQRHMQIHLYPKPFKCETF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00032571;
90% Identity: iTF_00032571;
80% Identity: iTF_00032571;