Amal016201.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus mali
Gene Symbol
-
Assembly
GCA_029378335.1
Location
CM055658.1:20090574-20095401[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 6.4e-05 0.0063 17.9 0.5 2 23 187 209 186 209 0.96
2 22 0.1 9.9 7.9 0.5 1 20 343 362 343 364 0.95
3 22 0.14 14 7.4 4.1 1 23 393 416 393 416 0.98
4 22 0.0024 0.24 13.0 0.2 2 20 425 443 424 445 0.94
5 22 1 98 4.7 0.7 1 19 452 470 452 475 0.79
6 22 5.7e-05 0.0056 18.1 3.1 2 23 546 567 545 567 0.97
7 22 0.0016 0.16 13.5 0.1 2 23 575 597 574 597 0.93
8 22 0.00069 0.067 14.7 0.4 1 23 621 643 621 643 0.97
9 22 6e-05 0.0059 18.0 0.2 2 23 646 667 645 667 0.96
10 22 0.00035 0.034 15.6 0.2 2 23 691 712 690 712 0.94
11 22 0.59 57 5.5 1.0 1 23 736 758 736 759 0.88
12 22 0.9 88 4.9 1.7 2 23 771 792 771 792 0.94
13 22 0.0006 0.058 14.9 6.1 2 21 832 851 831 853 0.94
14 22 1.2 1.2e+02 4.5 2.2 3 23 874 894 872 894 0.96
15 22 0.00015 0.015 16.8 2.0 1 23 917 939 917 939 0.94
16 22 0.032 3.1 9.4 1.2 1 23 952 975 952 975 0.94
17 22 0.00011 0.011 17.2 0.1 1 23 995 1017 995 1017 0.95
18 22 0.44 43 5.8 0.1 1 23 1066 1089 1066 1089 0.94
19 22 0.41 40 6.0 1.9 1 23 1100 1122 1100 1122 0.95
20 22 0.00074 0.073 14.6 2.0 3 23 1152 1173 1151 1173 0.96
21 22 0.0004 0.039 15.4 1.2 1 23 1181 1203 1181 1203 0.98
22 22 0.0083 0.81 11.3 0.5 1 23 1224 1247 1224 1247 0.97

Sequence Information

Coding Sequence
ATGGCACAACAGACTTTCGGTAATTACAGCTCCTGCTGTCGACTATGTTTATCAGAGAATTCCAGTTCCTTGAAGTCGGTTTTCGACTGTTCAACAAGCCGCTCATCATTGAGTCAGCGGATATATACCGATATAGGGATTGAGatTCAAGCTTTGGATAAAATATCTACTATGGTTTGCCAGTCTTGCATTGAGATGTTAAATAAATGGGACAAATACAAAAGAAGTTGCTTAATAAACCAAAAGACTTTGGAATTAAGGATGCAAAATTGGAATTCACATCGCATAGCTGATGtgAGCTTACAAATTAAAGATGAAACACTTTATGATGAAGTTGAAGATACCGCCCGTACAGTTAATGAAGATGAAAGAGAAGGGGCAATAAAGGAAGAACCTATGGAAACAGAACAGTGTACATTGGATGACTCATTTGAGGATCTTCCTCCTCCTTTAACTCCTCATCCACCTGAGGAAGTAAATGTATTTGATGAAGAAGACAATTCCTCTACTTCATTTAATGATGAAACAGTTAATAAAGTCTCCTCAGGAGACTCTAAAGTATGTGGTATTTGTGATAAAGTGTTCAGTTCAGTAAGCAATAAGAATAAACATGAACGAACAATCCATGTTAGAAAAGATCAAGAAGATTTAGAGAATATTAAATCTCAGAGAAATGATGTTTGTACAGAGGATGAAAATAGTTCTGGATTACATTCATGTAATGGTGAAACAAATTTCAGTGATGCCCATGTAATGCCCCCTGTCGATGATTTTATGAGTGAACCTGATCAACAAAAAATCCAGTTTGCTGCAAATCTAAAATTGAAACTCCAACATCATGCATCTCCAAGTCCAAACCCTTACACATTTAACGGATTTACTAAAATGGAAACcagttatttagaaaaatgtaaagCGATGGTTAAAATGCATGAAACATTTGTATGTGTATGTCATAATGAACAGCTCCATTCATTCAAACAAGTTCTTCAACATATTAGGAAAAGTCCCATATGGTTTCCATGTTACACTTGTTTTAATTGTATGATCACTTTCCCTGATCGGTCTTCTTATATGAAACATTATGCATCTTGTCCAAAAGAAAAGTTTAGAAACTTAAAAAGACTCGCAGagacaaaagaaaatactGAAATGAAAGTACGACTTTATCAGCTTTACGTTTGTATGCTCTGTAACTTTATTTTCGCATATCACGAGGACTTTTGTCAACATGTCAACACATTCCATGTTGGAAATTCGGAGACAGAAACGAGTTGCAAAAAATGCGGCAATACTTTCGAAACGGCAGATGCAGTAAGGCGACACATGTACTTGTCTTCATGTATAATGAACTATCGTTGTGATATTTGTGGGAAAATAATGGGGAGCATAACTGAATTTAAAGCGCACTGTGAACAGGAACATGATAACTCTGAAGGTTTCAGTCTGGAACACAAAGATAGTTACCGAAAGAGAGTTTCAGCACCTGCTGAATTAATGAGAAGATCTGGGGTGTCCAAACGACGAAATCGAGAAGCACCGAGgTTGGAACCAGAAGGCACTGACGTTGTTGGAGAACGGGAAAAAGTTATTAATCCTCATGCCTTCACGAGcccgaaaaaaaaatcacgtTCCACGTGCCACATTTGTGGTAAAGTTTATTCAAGTTATCACAACATGATGCGTCACGCAAAAGTTCATGATCAATCACTGAACACCCTTGTGTGCACATATTGTCCGCAGACGTTCCGACTCGCTGTTGAATTGAAACAGCACGAAAAAGAAGCCCACAGCATCAACAAATCTTTAGAACAGCCTTCTAGATCCAAACCGACACCTCGAAATGTTAAGGAATTTAAGTATTCATGCCCTGAGTGTAAAGCTACCTTCAATGACTTAGTAGAATTTATGAAACATAAAGACATGCACAGATTATCCTGTGAAGATTGTGGCAAGGAATTCATCACCCAGAAAGAATTAGATCAACACAGAAGTGTTCATCTTAACATTAAAGTTTATAGGGACTCCAAAACACATAATTACAAAAGTAGTATGGTTAGTGCTTTATTAATGTGCGAGGTTTGTGACAAGATATTTAACAGCAAAGAAGAATTGGTCCAACACAAGTCCCTTCATGAACAAATGCCCATTTTGACCGCGCAAGGCACACctgaagataataaaaaagacaatacTAACAAAAAGTATTCATGTCAAGTGTGTAATAAATCCTATTTGGGTTACGGTGGTCTTTGGGATCATAATAATAAGCATCATCCTGGCCGTAAAATTCCTCGCGAATATCCACGTCAATGTAAATATTGTGACAAAATGTTGTTTACGGGTGGGTCATGGCATATGCACAAGCAAGTGCACGAACGTGAATCCTTCCAATCACAAAAAGTatctaataacaaaaatcaTGTAAACAACATAAAACCGACAGTAAAGAAAACTACCAGTAAAGACAGTGATGACGCTGAGTCTTATTCTACTTGCAAAAAGTGCTTTAAAGTGTTCTCGAGCAAATACAGTTTACGTAATCATATGAAATGTCACGGTATTAATTCGACAAGTCGCTCTCAATCAAAACTCggaaataaatctaaaacGTATTGGTGTGATGTATGCCATCAAGCTTGTCAAGGGCTTACAGAACttcaaaaacataaacaaGAACATGTTGAAGAGAGCATGCCACAACTTAATAACGAAATTGAACCTGccgaaattaaaaactttcacATATTTCTTTGTGACCTGTGTGACAAAgattttacaacaaaatttgCCCTTAAAAAGCATAAAGAGAGGCATGACTTGGAATGCACGCCCATACAAAAGAAGCGTTACTTCTATTGTAAGCATTGTAAGATTCCTTTCAAAAATATGACTATTCTCGAGGACCATATGCAAGGAGAACATAACGAAAGCGTTGCACCTAAACCCCATACAAACCAAGTTAACACTGCTTTGAATAAATATCCGTGCAATGTGTGCAAAAAAGTCTTTGACACTTCCGCTGCTCTCTCGTCTCATCAAGGCTGGCACAAACGCGGCAAAGTTGAAAAACAGCTAAGGACACAGGAAAAGCTTTTCCGTAAAATGGTAAACTCCTTTCCTTTTAAAGAGGATAATAAAAAGCCAAAACTTGAGTTATTACCGCTATCCCAAACGCCAACAAGAATGGAGTCCTTTCAATGTCTTACTTGTCTGGTGCAGTTTCCAAATGAAACGGCCTTGCAATTACACGTTCTGGAAACTCATAGGAAAATTGACACCAAACCAATAGTTGTATTTCATTGTGATCCGTGTAATTTAGATTTCGAAACGCAATTAGCTTTTAAGAAACACCAGCAACTTCATAAATCGGCAGAGCAACAAAAAACTATTCAACAACCGTATAATTTACCAATAGCTGGAGATAGTCATAAAGTgccgaaaaataatttatgcaaGTATTGTCCGGCTCATTTTGCCCGTAGTGATCACTTAAATGCGCacgtaaaagaaaaacatagcgaatttgtaaagaaaaattttaaatgtaatcaGTGTGACCGATTATTTGAGAAACAAAATGCACTCTCTACTCATCTAAAAGTGCACGAAAGACAGAGGCAGGTCACCGGAACGGAAAAATCTATCGATAAGTTACCTAAGAAATTCTATTCTTGTTCTATTTGTCACGTCGGATTTCAAATTGCTAAAGATCTGAGAAACCATATAATTTCGACGCATCCGTTTTGA
Protein Sequence
MAQQTFGNYSSCCRLCLSENSSSLKSVFDCSTSRSSLSQRIYTDIGIEIQALDKISTMVCQSCIEMLNKWDKYKRSCLINQKTLELRMQNWNSHRIADVSLQIKDETLYDEVEDTARTVNEDEREGAIKEEPMETEQCTLDDSFEDLPPPLTPHPPEEVNVFDEEDNSSTSFNDETVNKVSSGDSKVCGICDKVFSSVSNKNKHERTIHVRKDQEDLENIKSQRNDVCTEDENSSGLHSCNGETNFSDAHVMPPVDDFMSEPDQQKIQFAANLKLKLQHHASPSPNPYTFNGFTKMETSYLEKCKAMVKMHETFVCVCHNEQLHSFKQVLQHIRKSPIWFPCYTCFNCMITFPDRSSYMKHYASCPKEKFRNLKRLAETKENTEMKVRLYQLYVCMLCNFIFAYHEDFCQHVNTFHVGNSETETSCKKCGNTFETADAVRRHMYLSSCIMNYRCDICGKIMGSITEFKAHCEQEHDNSEGFSLEHKDSYRKRVSAPAELMRRSGVSKRRNREAPRLEPEGTDVVGEREKVINPHAFTSPKKKSRSTCHICGKVYSSYHNMMRHAKVHDQSLNTLVCTYCPQTFRLAVELKQHEKEAHSINKSLEQPSRSKPTPRNVKEFKYSCPECKATFNDLVEFMKHKDMHRLSCEDCGKEFITQKELDQHRSVHLNIKVYRDSKTHNYKSSMVSALLMCEVCDKIFNSKEELVQHKSLHEQMPILTAQGTPEDNKKDNTNKKYSCQVCNKSYLGYGGLWDHNNKHHPGRKIPREYPRQCKYCDKMLFTGGSWHMHKQVHERESFQSQKVSNNKNHVNNIKPTVKKTTSKDSDDAESYSTCKKCFKVFSSKYSLRNHMKCHGINSTSRSQSKLGNKSKTYWCDVCHQACQGLTELQKHKQEHVEESMPQLNNEIEPAEIKNFHIFLCDLCDKDFTTKFALKKHKERHDLECTPIQKKRYFYCKHCKIPFKNMTILEDHMQGEHNESVAPKPHTNQVNTALNKYPCNVCKKVFDTSAALSSHQGWHKRGKVEKQLRTQEKLFRKMVNSFPFKEDNKKPKLELLPLSQTPTRMESFQCLTCLVQFPNETALQLHVLETHRKIDTKPIVVFHCDPCNLDFETQLAFKKHQQLHKSAEQQKTIQQPYNLPIAGDSHKVPKNNLCKYCPAHFARSDHLNAHVKEKHSEFVKKNFKCNQCDRLFEKQNALSTHLKVHERQRQVTGTEKSIDKLPKKFYSCSICHVGFQIAKDLRNHIISTHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00030404; iTF_00031280;
90% Identity
-
80% Identity
-