Acya011120.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- -
- Assembly
- GCA_947389935.1
- Location
- OX376707.1:4193150-4197856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.4e-05 0.0035 19.1 0.7 2 23 188 210 187 210 0.97 2 22 0.043 11 8.2 1.0 1 20 345 364 345 366 0.94 3 22 0.22 54 6.0 3.1 1 23 395 418 395 418 0.94 4 22 0.0004 0.099 14.6 0.1 2 20 427 445 427 447 0.94 5 22 0.58 1.4e+02 4.6 0.7 1 19 454 472 454 477 0.79 6 22 3.8e-05 0.0094 17.8 2.2 3 23 549 569 548 569 0.97 7 22 0.011 2.6 10.1 0.3 2 23 577 599 576 599 0.92 8 22 0.00038 0.093 14.7 0.2 1 23 622 644 622 644 0.97 9 22 6.6e-05 0.016 17.0 1.0 2 23 647 668 646 668 0.96 10 22 0.00013 0.032 16.1 0.4 2 23 692 713 691 713 0.94 11 22 0.65 1.6e+02 4.5 1.0 1 23 736 758 736 759 0.82 12 22 0.64 1.6e+02 4.5 1.1 2 23 771 792 771 792 0.90 13 22 9.3e-05 0.023 16.6 7.0 1 21 831 851 831 853 0.96 14 22 0.33 83 5.4 1.8 3 23 876 896 874 896 0.97 15 22 8e-05 0.02 16.8 2.0 1 23 920 942 920 942 0.94 16 22 0.017 4.2 9.5 1.2 1 23 955 978 955 978 0.94 17 22 0.00015 0.037 15.9 0.5 1 23 1000 1022 1000 1022 0.94 18 22 0.18 43 6.3 0.1 1 23 1060 1083 1060 1083 0.94 19 22 0.47 1.2e+02 4.9 2.2 1 23 1094 1116 1094 1116 0.95 20 22 2.8e-05 0.0068 18.2 1.2 1 23 1142 1165 1142 1165 0.96 21 22 5.8e-06 0.0014 20.4 0.7 1 23 1173 1195 1173 1195 0.98 22 22 0.0014 0.35 12.9 0.2 1 23 1216 1239 1216 1239 0.97
Sequence Information
- Coding Sequence
- ATGGCACAGCAGACTTTCGGAAATTACAGCTCCTGCTGTCGACTATGTTTATCAGAGAATTCCAGTTCCTTGAAGTCCATTTTCGACGGTTCAATGAGCCGCTCATCATTGAGTCAGCAAATACATTCCAATATTGGAATTGAGATTGGAGCCTCAGATAAACTATCCGTCATGATTTGCCAGTCTTGCATTGGAATGTTGAATAAATGGGATAGATACAAAAGATCTTGTTTAATAAATCAAAAAACGTTAGAGTTAAGAATGCAAAATTGGAATTCACATCGAATAGCTGATGTGAGCTTGCAAATTAAAGacgaaaccgtttacgatgacgatggggatgatgatgttcatgaagttaacgatgaggAAAGAGAAGGGGAAATCAAACAAGAACCTACGGAAACAGAACAGTGTAGATTGGACGACTCTTTTGAAGATTTTCCTCCTCCATTAACTCCTCATCCACCTGAGGAAAACAACATATTTGACGAAGACTCTTCCACTTCATTTGATAACGAAACGGTAAATAATACAGTTGTTCCTTCAGGAGACGCTAAAGTATGTAACATATGTGATAAAGTATTCAGCTCAGTAAGCAATAAGAACAAACATGAACGAACAATCCATGGTAAGAAAGATCAAGAAGATACAGAAAATAACCAATCTCTGATTACTGAAGTTTGTTTGGAGGATGAAGCTAGTTCAGGTTTGCCTTCGTGCAACGGTGAAACGAATTTAACTGATTCCCAACCGGTTGCTGCGGTAGTTGACGAAATTACAAGTGAATCTGATCAACAGAAAATTCAGTTCGCTGCAAACTTGAAATTGAAACTGCAACACCATGCATCTCCAAGCCCGAACCCTTACACGTTTAACGGATTTACCAAAACAGAGACGAGCTACTTAGAAAAATGTAAAGCGATGATTAAAATGAACGAAACATTGATTTGTGTATGTCACAATGAACAGCTCAACTCGTTCAAAAAAGTCCTTCAACATATTAGAAAGAATCCCATATGGTTTCCGTGTTTCACTTGCTTTAATTGCATGATCACTTTTACCGATCGGTCTACTTACATGAAGCATTACGCGTCTTGTCCAAAAGACAAGTTAAGAAACTTGAAGAGACTCGCGGACGCGAAAGAGAACACCGAGATGAAAGTACGACTGTATCAGCTTTACGTTTGCATGCTTTGCAACTTTATTTTCGCGTACCACGAGGATTTTTGCCAGCACGTCAACGCGTTCCACGTCGACAATTCCGAGACGGAAAGGAGCTGCAAAAAGTGCGGCACTGTTTTCGAAACAGCGGATGCTGTAAGGCGACACATGTATCTATCTTCGTGCATAATGAATTATCGATGCGATATTTGCGGAAAAATAATGGGGAGTATGACCGAATTTAAAGTGCATTGCGAACAAGTACATGATAATTCTGAAGGATTCACTTTAGAATATAAAGAAAATTGTCGGAAAAGAGCTTCGGCACCCGCCGAATTGGTCAGGAGATCCACAGAGGTGAAAAGGCGAATTCGAGAAGCACCCAGGTTAGAACCTGAAGGTGCAGAAGTTGTTGAGGAGCGCGAGAAAGTTATAAATCCTCATGCTGTAACAACTTCGAAAAAAAAGTCAAGTTCTGCTTGTCACATTTGTGGTAAAGTTTACTCGAGCTATCACAACATGATGCGTCACGCGAAAATTCATGATCAATCATGGAACACCCTCAAGTGCGCCCATTGTCCGGAAACGTTTCGACTCGTTGTTGAATTAAAACAACACGAAAACGAAGTTCACAACATTAACAAACCTCCAGACCGTCTTCCTGAACGCAAATCAGCATCAAATGTTAAAGAATTTAAGTATTCGTGTCCCGAATGTAAAGCCGCATTCAAAGATTTAGTAGAATTTATGAAACATAAGGACATGCATAGGTTGCCTTGTGGAGATTGCGGAAAGAAGTTCTGCAGTCAAAACGAATTAGATCAACACAGAAGCGTTCATCTTAATATTAAAGTCTACAGGGATTCAAAAACACGCAATTACAAGAGCAGTATGGTCAGTGCTCTATTAATGTGCGAGGTTTGTGATAAAATATTTAACACCAAAGAAGAATTGTCCCAGCACAAGTCCCTTCACGAACAAATGCCCGTTTTGACTGCACAAGACAGACGCGAAGACGAGAAAAAAGACGTTACTAAAAAGTACTCGTGTCAAGTGTGTAACAAGACGTATTTGGGATACGGCGGCCTTTGGGATCACAACAGCAAACATCACCCTGGTCGAAAAATACCCCGCCAGTATCCACGTCAGTGTAAATACTGCGACAAAATGCTTTTCAACGGCGGCGCGTGGCATATGCACAAGCTAATGCATGAACGTTTGACAGGCCAAACACCAAAACTACCTAACAATTTAAACCACGTAAACGACGTGAAATCGACGGTAAAGAAAACGACGAAGAGAGACAGCGACGACGCCGAATCTTATTACACGTGCAAAAAGTGCTTTAAAGTGTTTTCGAGCAAATACAGTTTACGTAATCACATGAAATGTCACGGTATCAATACAAACTCTACAAGTCGATCCCAATCGAAACAGGGAAACAAATCCAAAACGTATTGGTGCGATGTATGTCATCAAGCCTGTCAAGGGCTTGCGGAACTTCAAAAACATAAAAAAGAACACGTCGAAGAGGCCGTACCTGTAGTTAATAATCAAGCCCAAGCCGCTGAACCGTTGAAAAAACTCCATATATTCCTTTGCGACTTGTGCGACAAAGATTTCACTACTAAATTTGCCCTGAAAAAGCACAAAGAAAGGCACGACTTGGAGTGCACGCCTATTCAAAAGAAACGTTATTTCTACTGCAAGCACTGCAAGATTCCTTTCAAAAACATGACGATTCTTGAGGACCACATGCAAGGGGAACATAACGAAAGTATAGCGCCTAAACAACACACGAACCAGGTTGCTAATGCCACTTATTTGAATAAACATCCCTGTAATGTGTGCAAGAAAGTTTTTAGTACCACCGCTGCCCTCTCGTCTCATCAGGGCTGGCACAAACGTGGCAAGGTCGAAAAACAACTAAGAACGCAGGAAAAACTGTTTCGCAAAATGGTAAACTCGTTTCCTTCCAAAGACTGTAAAACTAAACAGGAGTTGCAGCAAACGTTTCAGTGTCTCACATGTTTGGCTCAGTTCCCTAACGAAACTGCCTTGCAGATACACGTTTTGGAAACTCATAGAAAAATTGACACCAAACAAATCGTCGTGTTCCATTGTGATCCGTGTAATTTAGACTTCGAAACGCAATTGACTTATAACAAACATCAACAGTTGCACAAAGTGGCACAGCAGCAACAAAAAACGATCCAACAACCGTTGAAAGTTGCTGATGGTCAGAAAGTGCCAAAAACTTATTCATGCAAGTATTGTCCGGCCAATTTCATACGTAGTGATCATTTGAACGCTCATGTGAAAGAAAAACATCCTGAATTTGTAAAGAAAAATTTTAAATGTACTATTTGCGATCGGGTATTCGAAAAACAAAACGCGCTCTCTACGCACTTGAAGGTACACGAAAGACAAAAACAAGTGGTCGGGACGGAAAAATCTATTGACAAGTTACCTAAAAAGTTCTATTCCTGTTCCATTTGTCACGTCGGGTTTCCCATTGCTAAAGATTTAAGGAACCATATAATTTCGACGCATCCGTTTTGA
- Protein Sequence
- MAQQTFGNYSSCCRLCLSENSSSLKSIFDGSMSRSSLSQQIHSNIGIEIGASDKLSVMICQSCIGMLNKWDRYKRSCLINQKTLELRMQNWNSHRIADVSLQIKDETVYDDDGDDDVHEVNDEEREGEIKQEPTETEQCRLDDSFEDFPPPLTPHPPEENNIFDEDSSTSFDNETVNNTVVPSGDAKVCNICDKVFSSVSNKNKHERTIHGKKDQEDTENNQSLITEVCLEDEASSGLPSCNGETNLTDSQPVAAVVDEITSESDQQKIQFAANLKLKLQHHASPSPNPYTFNGFTKTETSYLEKCKAMIKMNETLICVCHNEQLNSFKKVLQHIRKNPIWFPCFTCFNCMITFTDRSTYMKHYASCPKDKLRNLKRLADAKENTEMKVRLYQLYVCMLCNFIFAYHEDFCQHVNAFHVDNSETERSCKKCGTVFETADAVRRHMYLSSCIMNYRCDICGKIMGSMTEFKVHCEQVHDNSEGFTLEYKENCRKRASAPAELVRRSTEVKRRIREAPRLEPEGAEVVEEREKVINPHAVTTSKKKSSSACHICGKVYSSYHNMMRHAKIHDQSWNTLKCAHCPETFRLVVELKQHENEVHNINKPPDRLPERKSASNVKEFKYSCPECKAAFKDLVEFMKHKDMHRLPCGDCGKKFCSQNELDQHRSVHLNIKVYRDSKTRNYKSSMVSALLMCEVCDKIFNTKEELSQHKSLHEQMPVLTAQDRREDEKKDVTKKYSCQVCNKTYLGYGGLWDHNSKHHPGRKIPRQYPRQCKYCDKMLFNGGAWHMHKLMHERLTGQTPKLPNNLNHVNDVKSTVKKTTKRDSDDAESYYTCKKCFKVFSSKYSLRNHMKCHGINTNSTSRSQSKQGNKSKTYWCDVCHQACQGLAELQKHKKEHVEEAVPVVNNQAQAAEPLKKLHIFLCDLCDKDFTTKFALKKHKERHDLECTPIQKKRYFYCKHCKIPFKNMTILEDHMQGEHNESIAPKQHTNQVANATYLNKHPCNVCKKVFSTTAALSSHQGWHKRGKVEKQLRTQEKLFRKMVNSFPSKDCKTKQELQQTFQCLTCLAQFPNETALQIHVLETHRKIDTKQIVVFHCDPCNLDFETQLTYNKHQQLHKVAQQQQKTIQQPLKVADGQKVPKTYSCKYCPANFIRSDHLNAHVKEKHPEFVKKNFKCTICDRVFEKQNALSTHLKVHERQKQVVGTEKSIDKLPKKFYSCSICHVGFPIAKDLRNHIISTHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032249;
- 90% Identity
- -
- 80% Identity
- -