Abig007407.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998120.1:17363911-17368950[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.4e-05 0.0031 18.2 0.6 3 23 191 212 190 212 0.97 2 22 0.054 3.8 8.4 1.1 1 20 347 366 347 368 0.94 3 22 0.12 8.2 7.4 4.1 1 23 397 420 397 420 0.98 4 22 0.001 0.073 13.8 0.1 2 20 429 447 428 449 0.94 5 22 0.49 34 5.4 0.7 1 19 456 474 456 479 0.85 6 22 0.00016 0.011 16.4 2.2 3 23 551 571 550 571 0.97 7 22 0.0012 0.081 13.7 0.2 2 23 579 601 578 601 0.92 8 22 0.00075 0.052 14.3 0.2 1 23 625 647 625 647 0.96 9 22 6.5e-05 0.0045 17.6 0.3 2 23 650 671 649 671 0.96 10 22 0.0001 0.0073 17.0 0.2 2 23 695 716 694 716 0.92 11 22 0.54 38 5.3 1.0 1 23 739 761 739 762 0.88 12 22 0.43 30 5.6 0.7 2 23 774 795 774 795 0.94 13 22 0.0025 0.18 12.6 8.0 2 21 835 854 834 856 0.94 14 22 0.39 27 5.7 2.5 3 23 879 899 877 899 0.97 15 22 0.00012 0.0085 16.8 2.0 1 23 922 944 922 944 0.94 16 22 0.026 1.8 9.4 1.2 1 23 957 980 957 980 0.94 17 22 0.00014 0.0095 16.6 0.3 1 23 1000 1022 1000 1022 0.94 18 22 0.24 17 6.4 0.0 1 23 1071 1094 1071 1094 0.94 19 22 0.16 11 7.0 2.6 1 23 1105 1127 1105 1127 0.95 20 22 2.3e-05 0.0016 19.0 0.9 3 23 1158 1179 1157 1179 0.95 21 22 0.00044 0.03 15.0 1.3 1 23 1187 1209 1187 1209 0.98 22 22 0.0021 0.15 12.8 0.2 1 23 1230 1253 1230 1253 0.97
Sequence Information
- Coding Sequence
- ATGGCACAACAGACTTTCGGTAATTACAGCTCCTGCTGTCGACTATGTTTATCAGAGAATTCTAGTTCCTTGAAGTCCGTTTTCGACGGTACAACGAGCCACTCATCATTGAGTCAGCGGATAAATACTAGTATAGGAATTGAGatTGAAGCTTCAGATAAAATATCCACCATGGTTTGCCAGTCCTGCATTGCGGTGTTAAATGAATGGGACAAATACAAAAGAAGTTgcttaataaatcaaaaaacttTGGAGTTAAGAATGCAAAATTGGAATTCACATCAGATAGCTAATgtgAGCTTACAAATTAAGGATGAAACACTTTATGATGAAGTTGATGATACTGTTGATAATACCGCAAGGCCAGTTAATGATGAGAATAAAGAAAGgGCAATAAAAGAAGAACCTATGGAAACAGAGCAGTGTAGATTGGATGACTCATTTGAGGACCTTCCTCCACCATTAACTCCTTATCCACCTGAGGAAGAAAATATGTTTGATGAAGACAACTCCTCCACTTCATTTAATGATGAAACAGTTAATAAAGGTCCTTCAGGAGACTCTAAAATATGCAGTATTTGTGATAAAGTATTCAGCTCAGTAAGTAATAAGAACAAACATGAACGAACAATCCATGCTAAGAAAGATCAAGAAGATTCAGAAAATACTAAATCTCAGAATAGTGATGTTTGTGTAGAGGACGAGAACAGTTCTGGTTTACATTCATGTAATGGTGAAACAAATTTGAGCAATGCTCAATCAATGCCTGGAACAGTTGACAATTATATAAGTGAATCTGATCAACAAAAAATCCAATTTGCTGCCaatctaaaattaaaactcCAACATCATTCATCTCCAAGTCCAAGCCCTTACACATTTAGCGGATTCACCAAAATCGAGACAAGTTACTTAGAAAAATGTAAAGCAATGATTAAAATGAATGAAACATTCATATGTGTATGTCATAACGAACAGCTCAATTCATTCAAACAAATTCTTCAACACATTAGGAAGAATCCCATCTGGTTTCCATGTTACACTTGTTTTAACTGTATGATCACTTTTACTGATCGGTCTActtatatgaaacattatgtaacCTGTCCAAAAGACAAACTGAGAAACTTGAAGAGACTTGCAGAGACAAAAGAGAACACCGAGATGAAAGTACGTCTTTATCAGCTGTATGTTTGTATGCTTTGCAACTTTATTTTCGCATATCATGAAGATTTTTGCCAGCATGTCAACACTTTTCATGTTGGGAATTCAGAGACAGAGACAAGTTGTAAAAAGTGCGGTGTTACTTTCGAAACGGCGGATGCTGTAAGACGACACATGTACTTGTCTTCATGTATAATGAATTATCGTTGCGACATTTGCGGGAAAATAATGGGGAGTACGACCGAATTTAAAGCGCATTGCGAACTGGAACATGACAATTCTGAAGGTTTTAGCCTGGAAAACAACGATAATTACCGGAAGAGAGCTTCAGCACCTGctgaattaataaaaagacCTGAAGATTTGAAACGACGAAGTCGAGAAGCACCGAGgTTGGAACCTGAAACTACTGAAGTTATTGATGAACGTGAAAAAGTTATTAATCCTCATGCCTTAGCGGGTCCTAAAAAAAAATCACGCTCTGCTTGTCACATTTGTGGTAAAATTTATTCAAGTTATCATAACATGATGCGTCATGCAAAAGTCCATGATCAATCATTGAATACCCTCATGTGCAAATATTGTCCAGAAACGTTCCGACTCGCTGTTCAGTTGAAACAGCATGAAAATGAAGTCCACAACATTAATAAATCTCCAGAACAGCTCTCTGGATCCAAATCAACATCCCGAAATGTTACGGAATTTACGTATTCATGTCCTGAGTGTAATACTGCATTCGATGATTTAGTtgaatttatgaaacataaggAATTGCATAGGTTATCTTGTGAAGATTGTGGAAAGCAATTCGCCAGTCAGAAAGAATTAGATCAACACAGAAGTGTTCATCTTAATATTAAAGTCTACAGGGATTCCAAAACGCGTAATTACAAAAGCAGTATGGTTAGTGCTTTACTAATGTGTGAAGTGTGTGACAAAGTGTTCAACACCAAAGAAGAATTGATCCAACACAATTCCCTTCATGAACAAATGCCCCTTTTGACCGCGCAAAACAGACCAGAAGACGATAAAAACGACAGTACTAAAAAGTATTCATGTCAAGTATGTAATAAAACGTATTTAGGTTACGGTGGTCTTTGGGAACATAACAACAAGCATCATCCTGGCCGTAAAATTCCTCGCGAATATCCACGTCAATGTAAATATTGTGATAAAATGTTGTTCACGGGTGGGTCATGGTATATGCACAAGCAAATGCACGAACGTTTATCATTTCAATCACAAAAGGTATCTAATAACACAAATCACGTAAACGACGCAAAACCAATTGCAAAGAAAACCACCAGTAAAGACAGCGATGATGCTGAGTCGTATGTTACCTGCAAAAAGTGCTTTAAAGTGTTTTCGAGTAAATGCAATTTACGTAATCATATGAAATGTCACGGTATTAATACGAATTCAACAAGTCGCGCTCAGTCAAAACTCGGAAACAAATCTAAAACGTATTGGTGCGATGTATGTCATCAAGCTTGTCAAGGACTTACGGAACTTCAGAAACATAAACGGGAACATGTTGAAGAGGGCACGCCACAATTTAATAACGAAATTCAGGCCATTGAACCGAAAAAACTTCACATATTCCTTTGTGACTTGTGTGACAAAGATTTCACAACAAAATTTGCCCTTAAAAAGCATAAAGAAAGACATGACTTGGAGTGCACACCCATACAAAAAAAACGTTATTTCTACTGTAAGCATTGCAAGATTCCCTTCAAAAATATGACCATCCTCGAGGACCATATGCAAGGAGAACATAATGAAAGTATTGCACCTAAACTCAATACAAACCAAGTTACCACTGCTTCAAACAAACATCCCTGTAGTGTGTGCAAGAAAGTTTTCGACACTGCCTCTGCCCTCTCATCTCACCAGGGCTGGCATAAACGTGGTAAAGTTGAGAAACAACTAAGGACCCAAGAAAAACTTTTCCGCAAAATGGTTAACTCCTTTCCTTCTAAAGAggataataaaaaacaacaaaatgaattacaacCGCAACAGCAAACACCTACACAAATGGAATCTTTTCAATGTCTTACGTGTTTAGTGCAGTTTCCTAATGAAACTGCCTTGCAAATACACGTTCTGGAAGCTCATAGGAAAATTGACACCAAACAAATAGTCGTATTCCATTGTGATCCGTGTAATTTAGATTTCGAAACACAAACGACTTATAATAAACACCAGCAACTGCATAAAGTAGTTGAGCAACAACAAACTAACCAGCAACAAAATCATTTACCACTAAAAGCTGTAGATGGtcagaaactgttaaaaaataatCCGTGCAAATATTGTCCAGCTAATTTTACCCGTAGTGATCACTTAAACGCacacataaaagaaaaacatcGCGAATTTGTAAAGAAGAATTTTAAATGTACTCAGTGTGATCGGTTATTTGAGAAACAAAACGCACTCTCCACACATTTGAAAGTGCACGAAAGACAAAAACAGGTCGCCGGAACGGAAAAATCTATTGATAAGTTACCTAAAAAGTTCTATTCTTGTTCTATTTGTCATGTCGGATTTCCAATTGCTAAAGATCTTAGGAATCATATAATTTCGACGCATCCGTTTTGA
- Protein Sequence
- MAQQTFGNYSSCCRLCLSENSSSLKSVFDGTTSHSSLSQRINTSIGIEIEASDKISTMVCQSCIAVLNEWDKYKRSCLINQKTLELRMQNWNSHQIANVSLQIKDETLYDEVDDTVDNTARPVNDENKERAIKEEPMETEQCRLDDSFEDLPPPLTPYPPEEENMFDEDNSSTSFNDETVNKGPSGDSKICSICDKVFSSVSNKNKHERTIHAKKDQEDSENTKSQNSDVCVEDENSSGLHSCNGETNLSNAQSMPGTVDNYISESDQQKIQFAANLKLKLQHHSSPSPSPYTFSGFTKIETSYLEKCKAMIKMNETFICVCHNEQLNSFKQILQHIRKNPIWFPCYTCFNCMITFTDRSTYMKHYVTCPKDKLRNLKRLAETKENTEMKVRLYQLYVCMLCNFIFAYHEDFCQHVNTFHVGNSETETSCKKCGVTFETADAVRRHMYLSSCIMNYRCDICGKIMGSTTEFKAHCELEHDNSEGFSLENNDNYRKRASAPAELIKRPEDLKRRSREAPRLEPETTEVIDEREKVINPHALAGPKKKSRSACHICGKIYSSYHNMMRHAKVHDQSLNTLMCKYCPETFRLAVQLKQHENEVHNINKSPEQLSGSKSTSRNVTEFTYSCPECNTAFDDLVEFMKHKELHRLSCEDCGKQFASQKELDQHRSVHLNIKVYRDSKTRNYKSSMVSALLMCEVCDKVFNTKEELIQHNSLHEQMPLLTAQNRPEDDKNDSTKKYSCQVCNKTYLGYGGLWEHNNKHHPGRKIPREYPRQCKYCDKMLFTGGSWYMHKQMHERLSFQSQKVSNNTNHVNDAKPIAKKTTSKDSDDAESYVTCKKCFKVFSSKCNLRNHMKCHGINTNSTSRAQSKLGNKSKTYWCDVCHQACQGLTELQKHKREHVEEGTPQFNNEIQAIEPKKLHIFLCDLCDKDFTTKFALKKHKERHDLECTPIQKKRYFYCKHCKIPFKNMTILEDHMQGEHNESIAPKLNTNQVTTASNKHPCSVCKKVFDTASALSSHQGWHKRGKVEKQLRTQEKLFRKMVNSFPSKEDNKKQQNELQPQQQTPTQMESFQCLTCLVQFPNETALQIHVLEAHRKIDTKQIVVFHCDPCNLDFETQTTYNKHQQLHKVVEQQQTNQQQNHLPLKAVDGQKLLKNNPCKYCPANFTRSDHLNAHIKEKHREFVKKNFKCTQCDRLFEKQNALSTHLKVHERQKQVAGTEKSIDKLPKKFYSCSICHVGFPIAKDLRNHIISTHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032249;
- 90% Identity
- -
- 80% Identity
- -