Amal028732.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrilus mali
Gene Symbol
-
Assembly
GCA_029378335.1
Location
CM055662.1:19913194-19916745[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.023 2.2 9.9 1.5 1 20 180 199 180 203 0.89
2 18 0.0023 0.23 13.0 2.9 1 23 213 235 213 235 0.99
3 18 0.00017 0.017 16.6 2.5 1 23 241 263 241 263 0.95
4 18 0.00014 0.014 16.8 1.8 1 23 269 292 269 292 0.96
5 18 0.00011 0.01 17.2 0.7 1 23 300 322 300 322 0.98
6 18 2.3e-06 0.00023 22.5 2.6 1 23 328 350 328 350 0.98
7 18 0.00045 0.044 15.3 3.0 1 23 356 379 356 379 0.96
8 18 8.3e-05 0.0081 17.6 4.8 1 23 393 415 393 415 0.98
9 18 0.00033 0.032 15.7 0.4 1 22 421 442 421 442 0.96
10 18 0.036 3.5 9.3 0.6 1 19 588 606 588 611 0.85
11 18 0.00068 0.067 14.7 4.2 1 23 621 643 621 643 0.98
12 18 0.0073 0.72 11.4 4.0 1 23 649 671 649 671 0.95
13 18 0.0003 0.029 15.8 1.4 1 23 677 700 677 700 0.96
14 18 0.00022 0.022 16.2 1.3 1 23 708 730 708 730 0.98
15 18 6.6e-05 0.0064 17.9 1.4 1 23 736 758 736 758 0.98
16 18 0.0041 0.4 12.2 4.6 1 23 764 787 764 787 0.96
17 18 9.7e-05 0.0095 17.4 7.7 1 23 801 823 801 823 0.98
18 18 1.1e-06 0.0001 23.5 0.7 1 23 829 852 829 852 0.98

Sequence Information

Coding Sequence
atggaattaaataatatctgCAGTATTTGTTTACACAACGACTACACATTAACTCAATCCAAAGAAGTGGACACTAATAATGTTTCATGgtctgaaaaattaaaagcagtCATCCCTGAAATAGCATGGAATGAAGAGTATAATATTTGCAAGGCATGTATGCACCAAGTGGAAATAGCCACACTACTGCGAGATCTCTGTCTTCAAAACCAAGCCATCAGACTAACGTACATTAAAAATGAACAGCCCCCGACTGAAGAGGGTAACGTTGTACTGGTGAAAGAAATGAAACCTGCAAACGAAATAGACGACTACAATTCGAAACAAGTTCCTGATGATTTCAGAATAGAGGAGGATGCAAACGATTATGATGAAGAGCCCTCAAGAGTGTCCGATTCCAGTGAAGACAGTGACTACAATGATTGGCCTCCAACACCAACGCCTACCTCACAAAAGAAGACGAGGAAAAGGACATCTACTGAAGGCAAAGAGGGGACATCAACAACAACCAAAAAGACTCGTACAAAATACAACAGTTTCGACTGCGACATTTGCAATGAACACTTCACAAAATTAAAGGATTTTACTGATCATTCTGTAAATGTTCACAAATTAGACGCCCAGACTTTGAAACCATATAAATGTCCCCAGTGTGACAGCAAGTTTTCTGCTTCTTGTTACCTCCTGCGTCACTCACGAGTCCACGAGCAGAAAAGGAGCCACATATGCACCTACTGCGGAAAGGGCTATATCCATCGTGGCAACCTGAAACTACACGAGAAAGAGCACCTCAATAAGAGGGAATATCAGTGCGACAGTTGCCCCAAGAGTTTCAACACATTTCCTCACCTCAGGTCCCACAAACTCGTCGTACACACTGACAAAACCCTTTGGAAATACATTTGTCCTTATTGCGACAGGAGATTCCCGATAAAAACGAACTACGACCAACACGTAAGGAGACACATAGGGGAAAGAAACTTTTCGTGCCATCTCTGCGATAAGACTTTCATTGAAAACGCGAATTTGAAACGCCATTTAACGACTCACACGAATGTTCGCGCACACAAGTGTGAACATTGCCCGAAGGAGTTTAAATTGAAGAAGGTCCTCAGGATACATATGGCTAAGGCCCACGGTATTGGTGAGTACAAGATACCggttatcattaaaaaacacGAATGCACAGTTTGTGGAAAGAAGTTTGTGGCCAAGAATAAATTGAGCAGGCATATGTGTACCCATACAGGGGAGAGACCGTTCCCATGTACTATGTGCGACAAAAGGTTTACTGATGGGTCTTATGTGACACAACATCTGAAAACAaaaTGGGAAGACGATTTTTACATTTGCAAGGCATGCTTAAACCAAGTGGAGATCGCAACATTGTTAAGAGATCTCTGCCTTCAAAACCAAGCTGTTCGTCTAATGAATATCAAAAGCGAAAGCCATTCTGAGGACTTCCCCACTGCTACTTTCGAACAGAAAATTGACTGTGACAATGCCGTTATGATCCAGGAGCCCCAAACAGCCGCCGAGATAATGGACGAATGGACAGGAGAAGtcaacgacgacgacgacgacgactcCGCAAAAGCGACAGATTCAAGCGAAGACAGAGACTCCAGCGACGACGAAGATTGGCCTCCGCCCTCCTCAATCCCCAAGAAAACGCCAGGCCGAAGGGGACGAAGAAAACTACCAGAAAGTCAAACTAAAGTCAAAAAGGAACCCAAACAATCACGAGTGAAGTACAACAGCTTCGACTGCGAAATCTGCAATAAAAACTTCACCAACGTTAAAGTCTTCACCGAACATTCAGTTAATGAACACAACTTAGATGCAAAAACCTTAAAGCCTTACAAATGTACCCAATGTAACAACAAATTTTCGGCCTCGTACCACCTCCTTCGTCACACACGCGCCCACGAACAAAAACGAAGCCACATATGCACGTACTGCGGCAAGGGTTACATCCACCGTTGCGACCTGATTCTGCACGAAAAAGAGCACCTCAACAAACGCGAATATCAATGCGACAGTTGCCCGAAAAACTTTAATACTTATCCCCACCTCCGATCGCATAAGATCGTCGTCCACACCGACAGGAGCCTGTGGAAATTCATATGTCCCCATTGCGAACGCAGATTCCCGATAAAAGCAAACTACGATCGGCATGTGCGCAGGCACACGGGGGAAAAACACTACTCATGCCATTTGTGCGACAAACAGTTCGGGGAGAACGCCTATTTGCAGCGACATCTCATATCACATTCGAACGTTCGCGCTCACAAATGCGACCATTGCACGAAGGAGTTTAAGCTGAAGAAGGTCCTCAGGTTGCACATGGCCAAAGTGCATGGTATTGGAGACTACAAGATACCGGTCATTGTCAAAAAGCACGAGTGCACGATATGCGGGAAAAAGTTTTGCGCGAAAGATAAATTGAGCAGGCACATGTGTACTCACACCGGGGAAAAACCGTTTCCGTGTCCTATGTGCGACAAAAGGTTTACTGACAGGTCTTATGTGACACAACATTTAAAGACAGTGCATACCATCAAGAGCGAAGACATTAAAGATCTTAATGCCATGCTTTAG
Protein Sequence
MELNNICSICLHNDYTLTQSKEVDTNNVSWSEKLKAVIPEIAWNEEYNICKACMHQVEIATLLRDLCLQNQAIRLTYIKNEQPPTEEGNVVLVKEMKPANEIDDYNSKQVPDDFRIEEDANDYDEEPSRVSDSSEDSDYNDWPPTPTPTSQKKTRKRTSTEGKEGTSTTTKKTRTKYNSFDCDICNEHFTKLKDFTDHSVNVHKLDAQTLKPYKCPQCDSKFSASCYLLRHSRVHEQKRSHICTYCGKGYIHRGNLKLHEKEHLNKREYQCDSCPKSFNTFPHLRSHKLVVHTDKTLWKYICPYCDRRFPIKTNYDQHVRRHIGERNFSCHLCDKTFIENANLKRHLTTHTNVRAHKCEHCPKEFKLKKVLRIHMAKAHGIGEYKIPVIIKKHECTVCGKKFVAKNKLSRHMCTHTGERPFPCTMCDKRFTDGSYVTQHLKTKWEDDFYICKACLNQVEIATLLRDLCLQNQAVRLMNIKSESHSEDFPTATFEQKIDCDNAVMIQEPQTAAEIMDEWTGEVNDDDDDDSAKATDSSEDRDSSDDEDWPPPSSIPKKTPGRRGRRKLPESQTKVKKEPKQSRVKYNSFDCEICNKNFTNVKVFTEHSVNEHNLDAKTLKPYKCTQCNNKFSASYHLLRHTRAHEQKRSHICTYCGKGYIHRCDLILHEKEHLNKREYQCDSCPKNFNTYPHLRSHKIVVHTDRSLWKFICPHCERRFPIKANYDRHVRRHTGEKHYSCHLCDKQFGENAYLQRHLISHSNVRAHKCDHCTKEFKLKKVLRLHMAKVHGIGDYKIPVIVKKHECTICGKKFCAKDKLSRHMCTHTGEKPFPCPMCDKRFTDRSYVTQHLKTVHTIKSEDIKDLNAML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00031279;
90% Identity
iTF_00030390;
80% Identity
-