Acya016859.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- -
- Assembly
- GCA_947389935.1
- Location
- OX376712.1:20471849-20476976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.029 7.2 8.7 1.6 1 20 189 208 189 212 0.89 2 16 0.006 1.5 10.9 3.9 1 23 222 244 222 244 0.99 3 16 8.6e-05 0.021 16.7 2.5 1 23 250 272 250 272 0.95 4 16 7.3e-05 0.018 16.9 1.8 1 23 278 301 278 301 0.96 5 16 5.4e-05 0.013 17.3 0.7 1 23 309 331 309 331 0.98 6 16 1.2e-06 0.00029 22.5 2.6 1 23 337 359 337 359 0.98 7 16 0.00023 0.056 15.3 3.0 1 23 365 388 365 388 0.96 8 16 0.0086 2.1 10.4 0.5 1 20 542 561 542 565 0.89 9 16 0.00034 0.085 14.8 4.2 1 23 575 597 575 597 0.98 10 16 0.0037 0.91 11.5 4.0 1 23 603 625 603 625 0.95 11 16 0.00015 0.038 15.9 1.4 1 23 631 654 631 654 0.96 12 16 0.00011 0.028 16.3 1.3 1 23 662 684 662 684 0.98 13 16 3.3e-05 0.0082 18.0 1.4 1 23 690 712 690 712 0.98 14 16 0.0021 0.52 12.3 4.6 1 23 718 741 718 741 0.96 15 16 5.1e-05 0.013 17.4 7.5 1 23 755 777 755 777 0.98 16 16 5.3e-07 0.00013 23.6 0.7 1 23 783 806 783 806 0.98
Sequence Information
- Coding Sequence
- ATGGAATTAAATAGTATTTGTAGTATATGTTTACATAACGACTACACGTTGATTCAGTCGAAAGAAGTGGACACTAATAATGTTTCGTGGTCTGAAAAATTAAAAGCGGTCATCCCTGAAATAGCATGGAATGAAGAATATAGTATTTGCAAGGCGTGTTTGAACCAAGTGGAGATAGCCACACTGCTCAGAGACCTCTGTCTTCAAAATGAAGCTATTAGATTGACGTACATTAAAAATGAACAGTCCCCGACTGACGAGGGCAAAAATATTTACAGTAACGTCGTTTTAGTAAACGAAATGAAATCTTCGAACGAAATAGACTACTATGAAAGAAACCAAACGAAAAAAAATCCAGGCGATTTCAGTATGGAAAGGGACACAAATGACTACGACGAAGAACCGTCATCGAGACTATCCGATTCGAGTGAGGACAGCGATTGGCCTCCAACTCCAGCACCCATCCCACAAAAGAAAAAGAGGAAAAGGAAAAATATGGAAGACAAAGAAGGGACATCAACAACTAAAAAAGAACCCAAAAAAACTCGCACGAAATACAACAACTTCAATTGCGAAATCTGCAATGAGCACTTTACAAAAATAAAAGATTTCACGGATCATTCAGTGAACGAGCACAACTTGGAAGCCCAGTCTTTGAAACCGTACAAATGTTCCCAGTGTGACAGCAAGTTTTCTGCCTCCTGTTATCTATTACGCCACTCGCGAGTCCACGAGCAGAAGAGGAGTCACATTTGCACCTACTGCGGAAAGGGTTACATACATCGCGGCAACCTGAAGCTCCACGAGAAGGAGCACTTGAATAAACGAGAATATCAATGCGACAGTTGCCCGAAGAGCTTCAACACTTTTCCTCACCTCAGATCCCACAAACTTGTCGTACACACCGACAAGAATCTCTGGAAGTACATATGCCCTTATTGTGACCGGAGATTCCCGATAAAGACGAATTACGACCAACACGTGAGGAGACACATTGGAGAAAGAAACTTCTCTTGTCATCTCTGCGATAAGACCTTCATTGAGAACGCGAATTTGAAACGTCACCTGACCACACATACGAACGTTCGAGCGCACAAGTGCGAACATTGTCCGAAGGAGTTTAAACTCAAGAAGGTTCTCAGGATTCACATGGCCAAGGCTCATGGTATTGGCGAATATAAGATACCGGAATGGGAGGAGGAATTTTACATTTGCAAGGCATGTCTAAATCAAGTGGAAATCGCAACTTTACTGAGAGATCTCTGCCTCCATAACCAGGCCGTCCGCTTAATGAACATCAAAACCGAAAATAACTCCGCGGAATCCCCGGCACCTTTCGAACAGAAAATTGACTACGACAAAGTCATTGTAGCCCAAGAATCTAAAACATTAAACGACACAACAGACGAATGGACCGGAGAAGGCAACAACTGCGACGACTCGGCGAGAGCCACCGATTCCTCTGAGGACAGAGACTCCAGCGATGACGAAGATTGGCCTCCACCTTCATCCCTACCTAAGAAAAAACCAGGTCGACGAGGAAGAAGAAAATTATCTGATAAAGACAACAGCCAATTGAAAGTAAAGAAAGAACCGAAACAATCCCGAGTGAAGTACAACAGCTTCGACTGCGAAATATGCAACACGAACTTCACCAACGTGAAAGACTTCACCGAACATTCAGTGAATGAGCACAACTTAGACGCGAAAACTTTGAAACCTTACAAATGCACCCAGTGTAACAACAAGTTCTCGGCCTCCTACCACCTCCTACGTCACACGCGTGCCCACGAACAGAAACGGAGTCACATATGCACCTACTGCGGCAAAGGTTACATCCACCGTTGCGACCTGATCCTGCACGAGAAAGAACACTTAAACAAACGAGAATATCAATGTGATAGTTGTCCGaagaacttcaacacttatccccacctccggtcccataagatcgtcgtgcacaccgacagaagtctctggaagttcatatgtccccattgcgagcgccggtttccgatcaaagccaattacgatcggcacgtgcgcagacacacgggcgagaagcattactcgtgccatctgtgcgataagcagttcggcgagaatgcctacctgcagcgccatctcatatcgcattcgaacgttcgcgcgcacaagtgcgaccattgcacgaaggaattcaaactgaagaaggttctcaggttgcacatggccaaggtgcacggaattggcgactacaagataccggtcatcgtcaagaaacacgagtgctcgatatgcggcaagaaattttgcgcgaaggacaaactgagcaggcatatgtgcacccatacgggggagaaaccgttcccgtgtcccatgtgtgacaagaggttcacggatagatcttatgtcacgcaacatttgAAAACGGTGCATACCATCAAGACCGAAGACATTAAAGATCTTAGTGGCATGCTTTAG
- Protein Sequence
- MELNSICSICLHNDYTLIQSKEVDTNNVSWSEKLKAVIPEIAWNEEYSICKACLNQVEIATLLRDLCLQNEAIRLTYIKNEQSPTDEGKNIYSNVVLVNEMKSSNEIDYYERNQTKKNPGDFSMERDTNDYDEEPSSRLSDSSEDSDWPPTPAPIPQKKKRKRKNMEDKEGTSTTKKEPKKTRTKYNNFNCEICNEHFTKIKDFTDHSVNEHNLEAQSLKPYKCSQCDSKFSASCYLLRHSRVHEQKRSHICTYCGKGYIHRGNLKLHEKEHLNKREYQCDSCPKSFNTFPHLRSHKLVVHTDKNLWKYICPYCDRRFPIKTNYDQHVRRHIGERNFSCHLCDKTFIENANLKRHLTTHTNVRAHKCEHCPKEFKLKKVLRIHMAKAHGIGEYKIPEWEEEFYICKACLNQVEIATLLRDLCLHNQAVRLMNIKTENNSAESPAPFEQKIDYDKVIVAQESKTLNDTTDEWTGEGNNCDDSARATDSSEDRDSSDDEDWPPPSSLPKKKPGRRGRRKLSDKDNSQLKVKKEPKQSRVKYNSFDCEICNTNFTNVKDFTEHSVNEHNLDAKTLKPYKCTQCNNKFSASYHLLRHTRAHEQKRSHICTYCGKGYIHRCDLILHEKEHLNKREYQCDSCPKNFNTYPHLRSHKIVVHTDRSLWKFICPHCERRFPIKANYDRHVRRHTGEKHYSCHLCDKQFGENAYLQRHLISHSNVRAHKCDHCTKEFKLKKVLRLHMAKVHGIGDYKIPVIVKKHECSICGKKFCAKDKLSRHMCTHTGEKPFPCPMCDKRFTDRSYVTQHLKTVHTIKTEDIKDLSGML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00032229; iTF_00030390;
- 90% Identity
- -
- 80% Identity
- -