Abig016398.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- -
- Assembly
- GCA_963921985.1
- Location
- OY998125.1:13517400-13521698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.021 1.5 9.7 1.6 1 20 188 207 188 211 0.89 2 18 0.0019 0.13 13.0 2.9 1 23 221 243 221 243 0.99 3 18 0.00014 0.0098 16.6 2.5 1 23 249 271 249 271 0.95 4 18 0.00012 0.0083 16.8 1.8 1 23 277 300 277 300 0.96 5 18 8.8e-05 0.0061 17.2 0.7 1 23 308 330 308 330 0.98 6 18 6.6e-06 0.00046 20.7 2.5 1 23 336 358 336 358 0.98 7 18 0.00037 0.026 15.2 3.0 1 23 364 387 364 387 0.96 8 18 6.8e-05 0.0048 17.5 4.8 1 23 401 423 401 423 0.98 9 18 2.8e-05 0.002 18.8 0.7 1 23 429 452 429 452 0.97 10 18 0.014 1 10.2 0.6 1 20 599 618 599 622 0.89 11 18 0.00056 0.039 14.7 4.2 1 23 632 654 632 654 0.98 12 18 0.006 0.42 11.4 4.0 1 23 660 682 660 682 0.95 13 18 0.00025 0.017 15.8 1.4 1 23 688 711 688 711 0.96 14 18 0.00018 0.013 16.2 1.3 1 23 719 741 719 741 0.98 15 18 5.4e-05 0.0038 17.9 1.4 1 23 747 769 747 769 0.98 16 18 0.0034 0.24 12.2 4.6 1 23 775 798 775 798 0.96 17 18 8e-05 0.0056 17.3 7.7 1 23 812 834 812 834 0.98 18 18 8.7e-07 6.1e-05 23.5 0.7 1 23 840 863 840 863 0.98
Sequence Information
- Coding Sequence
- ATGGAATTAAATAGTATATGTAGTATTTGTTTACATAACGACTACACATTAATTCAGTCGAAAGAAGTGGACACTAATAATGTTTCATGGTCTGAAAAATTAAAAGCAGTCATCCCTGAAATAgcATGGAATGAAGAATATAATATTTGCAAGGCGTGTTTGCACCAAGTGGAAATAGCTACACTGTTAAGAGGCCTCTGTCTTCAAAATCAAGCCATCAGACTAACATATATTAAAAACGAACAGCCCGCCACTGATGAGGGCAAAACTATTTACAGTAACGTCGTTCTAGTGAACGAAATGAAACCTGCGAATGAAATAGATGAATACCAAACAAAACAAGTTCCTGATGATTTCGGGATGGAAAGGGATGCAAATGATTACGAAGAAGAACCCTCGAGACTGTCCGATTCGAGTGAAGACAGTGACTACAATGATTGGCCTCCAACACCAATACCCACCTCACAAAAAAAGACAAGAAAAAAGAAATCTGCCGAAGGCAATGAGGGGACATCAACAACCAAAAAAGAGCCTAAAAAAACCCGTACTAAGTACAATAGTTTCGACTGCGACATTTGCAACGAACACTTCACAAAATTAAAGGATTTTACTGATCATTCTGTGAATGAGCACAACCTAGAAGCCCAGATGTTGAAACCATACAAATGTCCCCAGTGTGACAGCAAGTTTTCTGCTTCTTGTTACCTGTTACGTCACTCGCGAGTCCATGAGCAGAAGAGGAGTCACATATGCACATACTGTGGCAAGGGATATATCCATCGTGGCAATCTGAAACTTCATGAGAAAGAGCACTTAAACAAGAGGGAGTATCAGTGCGACAGTTGCCCAAAGAGTTTCAACACTTTTCCTCATCTTAGATCTCACAAACTTGTTGTTCACACTGACAAGAATCTTTGGAAATATATTTGTCCCTACTGTGACAGAAGATTCCCGATAAAGACCAACTACGACCAGCACGTAAGGAGACACATCGGAGAAAGGAACTTTTCGTGTCATCTTTGTGAGAAGACGTTCATTGAGAACGCGAATTTGAAACGCCATTTAACCACGCATACGAATGTACGTGCGCATAAGTGCGAACATTGTCCGAAGGAGTTTAAACTGAAGAAGGTTCTTAGAATTCATATGGCTAAGGCTCATGGTATAGGCGAGTATAAGATACCGGTTATTGTTAAAAAACATGAATGCACGGTTTGTGGAAAAAAGTTTGTTGCTAAGAACAAACTGAGCAGGCACATGTGCACCCATACAGGGGAGAGGCCCTTTCCATGTACCATGTGCGACAAAAGATTCACCGATGGGTCATATGTGACACAACATTTGAAAACAGTGCATGGAATTaaatgGGAGGACGAGTTTTATATTTGCAAAGCATGTTTGAACCAAGTGGAAATCGCCACTTTGTTGAGAGATCTCTGTCTTCATAACCAGGCGGTTCGTTTAATGAATGTTAAAAGTGAAAATCATTCTGGTGATTTCCCCACACCTTTCGAACAAAAAAATGACTATGACAAAGTCATTGTGGTTCAAGAATCTAAGGTAGTAGCGGAGACAACGGACGAATGGACTGGAGAAGGCAACGACTGCGATGATTCGACGAAAGCGACTGATTCCAGTGAAGACAGAGACTCTAGCGACGATGAAGATTGGCCTCCACCCTCGTCTATACCCAAGAAAAAACCAGGCCGAAGAGGAAGAAGAAAACTATCAGAAAGAGACAGCCAACCTAAAGTCAAGAAGGAACCTAAACAATCACGAGTGAAATACAACAGCTTTGACTGCGAAATCTGCAACACAAATTTCACCAACGTGAAAGATTTCACCGAACATTCAGTCAACGACCACAACTTAGACGCAAAAACCCTAAAACCTTACAAATGTACCCAATGCAACAATAAATTTTCTGCCTCCTACCACCTCCTACGTCACACACGTGCTCACGAGCAAAAACGGAGCCACATATGTACGTACTGCGGCAAGGGTTACATCCACCGTTGCGACCTGATCCTGCACGAAAAAGAACACCTTAATAAACGAGAATATCAATGCGACAGTTGTCCAAAAAACTTCAACACCTATCCTCACCTACGATCGCACAAAATCGTCGTTCACACTGATAGAAGCCTCTGGAAATTCATATGTCCCCATTGCGAACGTAGATTCCCGATCAAGGCCAACTACGATCGGCACGTTCGCAGGCACACGGGGGAGAAACACTACTCGTGCCATCTGTGCGACAAACAGTTCGGCGAAAATGCTTACTTGCAGCGCCATCTCATATCGCATTCGAATGTTCGCGCACACAAGTGCGACCATTGCACGAAAGAGTTCAAACTGAAAAAGGTCCTCAGGTTGCACATGGCCAAGGTGCACGGCATTGGTGATTACAAGATACCGGTCATTGTGAAAAAACACGAGTGCACGATATGCGGGAAGAAATTTTGCGCGAAAGACAAACTGAGTAGGCATATGTGCACTCACACCGGGGAAAAACCGTTCCCATGTCCCATGTGTGACAAAAGGTTTACTGACCGGTCTTATGTGACGCAACATTTGAAAACAGTGCACACTATCAAGAATGAAGACATAAAAGATCTTAATTCCATgctttag
- Protein Sequence
- MELNSICSICLHNDYTLIQSKEVDTNNVSWSEKLKAVIPEIAWNEEYNICKACLHQVEIATLLRGLCLQNQAIRLTYIKNEQPATDEGKTIYSNVVLVNEMKPANEIDEYQTKQVPDDFGMERDANDYEEEPSRLSDSSEDSDYNDWPPTPIPTSQKKTRKKKSAEGNEGTSTTKKEPKKTRTKYNSFDCDICNEHFTKLKDFTDHSVNEHNLEAQMLKPYKCPQCDSKFSASCYLLRHSRVHEQKRSHICTYCGKGYIHRGNLKLHEKEHLNKREYQCDSCPKSFNTFPHLRSHKLVVHTDKNLWKYICPYCDRRFPIKTNYDQHVRRHIGERNFSCHLCEKTFIENANLKRHLTTHTNVRAHKCEHCPKEFKLKKVLRIHMAKAHGIGEYKIPVIVKKHECTVCGKKFVAKNKLSRHMCTHTGERPFPCTMCDKRFTDGSYVTQHLKTVHGIKWEDEFYICKACLNQVEIATLLRDLCLHNQAVRLMNVKSENHSGDFPTPFEQKNDYDKVIVVQESKVVAETTDEWTGEGNDCDDSTKATDSSEDRDSSDDEDWPPPSSIPKKKPGRRGRRKLSERDSQPKVKKEPKQSRVKYNSFDCEICNTNFTNVKDFTEHSVNDHNLDAKTLKPYKCTQCNNKFSASYHLLRHTRAHEQKRSHICTYCGKGYIHRCDLILHEKEHLNKREYQCDSCPKNFNTYPHLRSHKIVVHTDRSLWKFICPHCERRFPIKANYDRHVRRHTGEKHYSCHLCDKQFGENAYLQRHLISHSNVRAHKCDHCTKEFKLKKVLRLHMAKVHGIGDYKIPVIVKKHECTICGKKFCAKDKLSRHMCTHTGEKPFPCPMCDKRFTDRSYVTQHLKTVHTIKNEDIKDLNSML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031279;
- 90% Identity
- iTF_00032229;
- 80% Identity
- -