Amal016074.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029378335.1
- Location
- CM055658.1:18800579-18815674[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-91 1.2e-86 291.8 35.1 1 300 28 301 28 301 0.89 2 2 0.02 7.3e+02 0.2 6.1 120 171 299 350 299 375 0.72
Sequence Information
- Coding Sequence
- ATGGATGGAGGTGGTGGACGCAGAAGAATTAATCCAAAAACTTCTGCTGAAGATCAAGCTCTCGACCAAATTGCTAAAGAGGCCGAGGCTCGTCTCCTTGCTCGTAGGCAAGCGAGGGCTGAAGCAAGAGAGATCCGTATGCGTGAACTTGAGAGACAACAGAAAGAACAAGAGGAAAATGCTGATCGACAGTATGACATGATCGAAGCTTCAAGTCGATCGACTCGAACGGTCGGCAGTAGGTATTTGTCGAGCAGAAGGAGTTCTGAGGACTCGCTCGAAGATGGAGGTAGCCTCAGGGAACTTAGACACGAGCTCAAGGAGCTTGaggaaaaatttcgaaaagcTATGATAGCTAATGCTCAGCTTGACAACGAGAAAGCTGCACAAACGTATCaattagaattattaaaagatagGATAGAGGAAATTGAAGATGAATTGTCGCGTTTAAAACGTGAACATAGGGATAAGTACGACTTGGCTGTGACACGTAGCGAATTGGAAGAAAGGGATCGGTTAATAGCCGAAAAAGGACTGGTGATTGTCATCGAAGAGGAAGAACCACCTCTAACAGACGGTACCGTCAACGGTGAAGTGATAGCAACCCCTAAAAAAGTGCTAGTCACCGCAGAAAATGCCCAGTTACTAGAGTCCGTGGGCGAGGGGAGTCTAGATGTTCGATTAGGAAAATTCGTAGCTGAAAAGAAGGATCTTCAGGATCAAATAAATCATCTTCGATTagaattagaagaagaaagaagtaaaagaaggAAATCCAGTGGTATTTCAAATGGGCCAACGACTGACGATTACGATTTGGACGATGTTCAAAGAGATGTGGTTAGGCAGTTGGCGGACTTTAAATTTAGAGCTCAAAAAGCAGAACAAGATGTGGCTACCTTGCAGGCTACGGTAGCACGGCTTGAGAGTCAGGTCATAAGGTATAAGTCGGCTGCAGAGATGTACGAGAAGTCAGAGGAGGCCTTAAAACAAGAGAAAAGAAAACTCCAAAGAGAGgcgAGAGAAGCTCAGAATAGAGCAGAAGAATTGGAGACCTCAAACACTCACCTCCTCAAACGACTTGACAAACTCAAGAATGCCAAATCAGCCCTCCTGAAGGACCTCTGA
- Protein Sequence
- MDGGGGRRRINPKTSAEDQALDQIAKEAEARLLARRQARAEAREIRMRELERQQKEQEENADRQYDMIEASSRSTRTVGSRYLSSRRSSEDSLEDGGSLRELRHELKELEEKFRKAMIANAQLDNEKAAQTYQLELLKDRIEEIEDELSRLKREHRDKYDLAVTRSELEERDRLIAEKGLVIVIEEEEPPLTDGTVNGEVIATPKKVLVTAENAQLLESVGEGSLDVRLGKFVAEKKDLQDQINHLRLELEEERSKRRKSSGISNGPTTDDYDLDDVQRDVVRQLADFKFRAQKAEQDVATLQATVARLESQVIRYKSAAEMYEKSEEALKQEKRKLQREAREAQNRAEELETSNTHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151782;
- 90% Identity
- -
- 80% Identity
- -