Amal000918.1
Basic Information
- Insect
- Agrilus mali
- Gene Symbol
- PAXBP1
- Assembly
- GCA_029378335.1
- Location
- CM055654.1:12281137-12283859[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.47 8.7e+03 -3.0 0.3 58 98 75 115 63 122 0.60 2 2 4.5e-32 8.4e-28 98.8 0.4 3 272 510 717 508 719 0.92
Sequence Information
- Coding Sequence
- ATGTCTCTTTTTCGAAAACCAAAGAAGCATATACAACGGCGAGTGTTTACAGAAAATGATGAAGACGATGAAGATGTTATGGAAGTTGAAGTTCCTGCCGAAAAAGATACGaagaaaaaagacaaaaacaaagcttcaaataagaaaaaacaacCCTTGTTAAGTTTTGAAACAGAAGAAGAGGGAGAGGTTTTTCAAGTGAAGAAATCATCCCATAgtagaaaaataatgaaattatttgagAAGGAGAAGCataagaaaaaagataaaacagaaaaagaagaagttaAACATAAAGAACTAGTTACAGAAATTATTACAGATGATCTTATAATGAAAGTAAATTCAAGCCATAAAGTTCATGCAATATTACCAGAACCACCACCACCCCCTATATTGAATGGCAGAGATGCTCTCTGTGCAGGGAAAGATGATTTATCttcagaagaagaagaaagtaATTCAGcacataaattttcaaaaccagataatttcaaaaaagtgtTAGAATCTGGGGAAATTCCTGATGCTGCAATGATTCATGCAGCTCGAAAACGAAGACAAAGGGCAAGGGAATTGGGTGGTGACTATGTTTCAATAGAAGATGAAGAAGGGAAAGAGGATACAGGAAGATTGGTACGTGATGATGAACATGATGGCAGTGATGATGAAGAAAGAATAGATATGGATATTAACCCACTTAGAAGAGATCAAGATAGGCGAAGGGAACAATTTTTAGCTGCTCAGGAGTCAGAAGAAGAGGCTGATCAGGAAATTGATGAATGGGAAAACCAACAAATAAGAAAAGGAGTTACAGGAGCTCCCGTTACTGTGATGTCACAAGAGTATATATATGACAACTACACCTCTGCAGCACAACCTGCTCCCTCAGTGGCGTCTTTTACATTTGACTCAAAAGTTCAAGTCACTCCAGAAACTATAGTTGATAAACTTCGAGCTCACTATCAAATGTTGAGCACTTCAAGAGATGCACATTTAGTAAAACTTCAAAAAGTTACTGACAGGCTTATTGAAGCAAATGAAGAACTCGAAGAGCAAAAGAAGCGTGCACCAGTAGCTGCAGAACGGTTTCGATTTTATCAAGAATTGAGAGGTTATGTGACTGATCTTGTAGAATGTTTTGACGAAAAGGTGGCACTAATTGCAGATTTAGAACAAAGATCAATTGACTTAATGACTCGTAAAGCAATTTGGCTAATAGAACGTCGAAGACAAGATGTACGAGATCAAGCAGAAGAAGCAACTCTTGCATGTAAACCTAATTTGGTTCGTAAAAATGCTGAAGATGAGGAAAAAATACGAAGAGCAGCCGAGAGAGAAGGTCGTCGAACGCGAAGAAGAAGGGCTCGTGAACAAGGAGGGCAACAGAAGCATGTAGAAGGAATGTCAAGTGATGATGAAATTTCACAACAAGACATACTTGGTTTTGATAAAGATAGAGAgcaaatcgaacttgaaattCAAGCCGTATTAGAAGATGTAATGGATGATTTTTCGtcaattgcaaatattttaattaagtttgaaCAATGGAAGGAGACCGATTTGACAGCTTATAATGAAGCTTATGGTACTCTTTGCTTGCCGCGAATAGTTACTCCTCTTATTCGTTTAGACTTGTTATTTTGGGATCCATTGACTGAATCGATTGAATTAGAGAAACTAGATTGGTATCGTACTTTGGCCCTGTATGGTTTACATGACAATGAAACAGAAAATGATCTAAACAAAGACCCTGACGTCAGTTTGTTACCGAAGATAATTGATAAAGTCGTTGTGCCGAAACTAACACAACTTGTGGATAGGTGTTGGGATCCCCTTTCTAGTTCACAAACTTTAAGATTAGTAGGAACTATAAGTAGATACATACGACGTTTTCCAACTTTAGGACCCGCAAGTAAATCattacaaaatttgtttagTGCAATTTTACACAAATTGAAAGAAGCCTTAGAACATGATGTCTTTATTCCGATTGTTCCGAAATTAGCCGAAACGAAGACGCCATTCTTTCAAAGACAGTTTGCGAGCGGTCTTAAATTACTTAGAAATATTACGAGTTGGCAAggaattttaaatgataacACTTTGAAGGACTTGGCTTTAAATTCTCTTTTAAATCGTTACTTACTCAgcgcaataaaaatttgtcaacTTACCGATGCAGTTAATAAAATGGGATTAATCAGTCACATACTTCCTCGAATATGGTTGCAAAACAACACTAGTCATTTGGAAATGTTCAGTATGTGTGTTACTAATTTAGGACAACAGCTTGATAAAAACAATCCGTTACATTTGGAATCAATAGAAACTTtatcaaatataattaaatctcttagaaattaa
- Protein Sequence
- MSLFRKPKKHIQRRVFTENDEDDEDVMEVEVPAEKDTKKKDKNKASNKKKQPLLSFETEEEGEVFQVKKSSHSRKIMKLFEKEKHKKKDKTEKEEVKHKELVTEIITDDLIMKVNSSHKVHAILPEPPPPPILNGRDALCAGKDDLSSEEEESNSAHKFSKPDNFKKVLESGEIPDAAMIHAARKRRQRARELGGDYVSIEDEEGKEDTGRLVRDDEHDGSDDEERIDMDINPLRRDQDRRREQFLAAQESEEEADQEIDEWENQQIRKGVTGAPVTVMSQEYIYDNYTSAAQPAPSVASFTFDSKVQVTPETIVDKLRAHYQMLSTSRDAHLVKLQKVTDRLIEANEELEEQKKRAPVAAERFRFYQELRGYVTDLVECFDEKVALIADLEQRSIDLMTRKAIWLIERRRQDVRDQAEEATLACKPNLVRKNAEDEEKIRRAAEREGRRTRRRRAREQGGQQKHVEGMSSDDEISQQDILGFDKDREQIELEIQAVLEDVMDDFSSIANILIKFEQWKETDLTAYNEAYGTLCLPRIVTPLIRLDLLFWDPLTESIELEKLDWYRTLALYGLHDNETENDLNKDPDVSLLPKIIDKVVVPKLTQLVDRCWDPLSSSQTLRLVGTISRYIRRFPTLGPASKSLQNLFSAILHKLKEALEHDVFIPIVPKLAETKTPFFQRQFASGLKLLRNITSWQGILNDNTLKDLALNSLLNRYLLSAIKICQLTDAVNKMGLISHILPRIWLQNNTSHLEMFSMCVTNLGQQLDKNNPLHLESIETLSNIIKSLRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030208;
- 90% Identity
- iTF_00030208;
- 80% Identity
- -