Acya011028.1
Basic Information
- Insect
- Agrilus cyanescens
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947389935.1
- Location
- OX376707.1:3247115-3251597[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.25 1.3e+04 -3.4 1.6 60 60 69 69 33 117 0.44 2 4 0.18 9e+03 -2.9 0.8 176 176 122 122 80 182 0.48 3 4 4.2e-104 2.1e-99 334.1 30.4 1 300 265 553 265 553 0.90 4 4 0.027 1.4e+03 -0.2 5.2 121 168 552 599 551 627 0.71
Sequence Information
- Coding Sequence
- ATGTGCGACGACGACTGTATTAATTTAACAAAACTCAAGGACGATAGCGATAGTTGCTGCGGTTCAAGTGGGAGCCATGGAAGTCTGGACTCATTAGTCGATATACTCAATTCACTTGACTCGGACGAAGAAAACGCAGACCAGCGAACTCAAAAAGTTAGTTCGAAAAATGAAGAAAGTTCCCCTGGCACTTCAGACGTAACGGTAACAGATCACAAGGAAGGATCATGTGATAAAAGAAATTATCTGTTGGAAATTGACCGAAATTCTGTATCAGAAGAAGAAGATCTTAACATTCAAGGTGAACAAGAAATGGATCACGAATCCACGGAAGTAGAACCAGAGGAGACCAAGGACGATGTTCTTCCTTCTTCCGGAAAGGAAATTGTCCCGTCTTCTGCTGACACAGTGAACAGTAAAGATACAACAACAAACGAACAGTTAAATACCGTAATTAGTGAAAAGTTTGACATTAGTGGAGTAACTGAAGATGAGTCCAATGAGTCAGATAAAGAGTTTAAAATTGAAGGTGTTACTGAGGATGAATCCAGTGATAATATAAAAGACTTGGATAAAAGTGGTGGTGGAAAGTTCAAAATCAGTGGTGTTACCGAAGACGAAACCTGTGATCATTTCGTGCCAGTGAAAAGATCACGTAGAGGAAGTCATGGGTCGGAGTGCGAAGGACGAGATAGTCCAGTGCAAAGGAAACTTAGCAGGAGTCATAGTGTTGTTTCTGACCACGATGACTCGGTCATTATTTCCCAATATTTGGGACAAAGTTCTGACGAAGCCGAGGCTCGTCTCCTTGCCCGTAGGCAAGCCAGGGCTGAAGCCAGAGAAATCCGTATGCGTGAACTTGAAAGACAACAGAAAGAGCAAGAGGAAAATGCTGATCGACAATATGACATGATAGAAGCTTCAAGTCGGTCGACTCGAACGGTCGGCAGTAGGTATTTGTCAAGCAGGAGGAGTTCTGAGGACTCGCTGGAAGATGGAGGAAGCCTCAGGGAACTTAGACACGAGCTCAAAGAGCTTGAGGAAAAATTTCGAAAAGCTATGATAGGTAATGCTCAGCTTGACAACGAGAAAGCTGCACAAACGTATCAGTTAGAATTGTTAAAAGATAGGATAGAGGAAATTGAAGATGAACTGTCGCGTTTGAAACGCGAACATAGAGATAAGTGTAGAGAACATGACCAGCTAAAGAGGCTGTCTGCTCGTCTAAAGGACGACTTGGCTGTGACACGTAGCGAGTTGGAAGAAAGGGATCGACTAATAGCCGAAAAAGGACTGGTGATTGTCATTGAAGAGGAAGAACCACCTCTGACGGATGGTACCGTTAACGGTGAAGTTATCCCGACCCCTAAAAAAGTGCTAGTCACCGCGGAAAATGCCCAGTTGCTAGAGTCCGCTGGAGAGGGGAGTCTAGACGTTCGATTAGGAAAATTCGTAGCTGAAAAGAAAGATCTTCAAGATCAAATAAATCATCTTCGGTTAGAATTAGAAGAGGAAAGAAATAAAAGAAGAAAATCAAGTGGTATTTCAAACGGACCTACGTCTGACGATTACGATTTGGACGATGTACAAAGAGATGTGGTCAGACAGTTGGCAGACTTTAAATTTAGGGCCCAAAAAGCAGAACAAGACGTGGCTACCTTGCAGGCTACGGTGGCACGACTTGAAAGCCAAGTCATACGGTATAAGTCGGCAGCCGAAATGTACGAGAAGTCAGAGGAGGCTTTAAAACAAGAGAAAAGGAAACTCCAGAGAGAGGCGAGAGAAGCTCAGAGTAGAGCGGACGAATTGGAAACGTCAAACACTCACCTCCTAAAACGACTCGACAAACTCAAGAATGCTAAATCAGCCCTTCTAAAGGATCTCTGA
- Protein Sequence
- MCDDDCINLTKLKDDSDSCCGSSGSHGSLDSLVDILNSLDSDEENADQRTQKVSSKNEESSPGTSDVTVTDHKEGSCDKRNYLLEIDRNSVSEEEDLNIQGEQEMDHESTEVEPEETKDDVLPSSGKEIVPSSADTVNSKDTTTNEQLNTVISEKFDISGVTEDESNESDKEFKIEGVTEDESSDNIKDLDKSGGGKFKISGVTEDETCDHFVPVKRSRRGSHGSECEGRDSPVQRKLSRSHSVVSDHDDSVIISQYLGQSSDEAEARLLARRQARAEAREIRMRELERQQKEQEENADRQYDMIEASSRSTRTVGSRYLSSRRSSEDSLEDGGSLRELRHELKELEEKFRKAMIGNAQLDNEKAAQTYQLELLKDRIEEIEDELSRLKREHRDKCREHDQLKRLSARLKDDLAVTRSELEERDRLIAEKGLVIVIEEEEPPLTDGTVNGEVIPTPKKVLVTAENAQLLESAGEGSLDVRLGKFVAEKKDLQDQINHLRLELEEERNKRRKSSGISNGPTSDDYDLDDVQRDVVRQLADFKFRAQKAEQDVATLQATVARLESQVIRYKSAAEMYEKSEEALKQEKRKLQREAREAQSRADELETSNTHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00030209;
- 90% Identity
- -
- 80% Identity
- -