Abig006840.1
Basic Information
- Insect
- Agrilus biguttatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963921985.1
- Location
- OY998120.1:5303991-5309334[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-104 1.1e-99 333.8 31.2 1 300 286 574 286 574 0.90 2 2 0.044 9.6e+02 -0.9 6.2 121 170 573 622 572 648 0.72
Sequence Information
- Coding Sequence
- ATGTGCGACGAcgactgtattaagttaacagAACTCAAGGACGATAGCGATAGTTGCTGCGGTTTAAGTGGGAGCCATGGAAGTCTGGACTCATTAGTCGATATACTCAATTCACTTGATTCGGACGAAGAAAATACAGACCAGCACACTCAGAAAATCGAAAAAGTCCGTTATGAAAGTTTAATAAGTTCGGGGAAAGAAGCAGAAAGATCAGCTGCCAGTGGAGCAGTAGTAGATAACACGAAAGAAGGATCATGTGATGAACAAAATTATCGGTTAGAAGTTTCTCTAATATCTACATCAGAGGAAAGCAGTCTTGTGAAAGACCGTAACAACCAAGGCAAGCAAGAAATGGATCACGAACCCACGAAATTAGAGTCGGTGGAAACCAAGGATGCTTTCCCTGCTTCCAGAGAGACAGTTGTCCCTTCTTCCAATATTACTGAAGAGCCAACAAGTGGAATGACAAACGGTGATCTTCACGAACAGTCTGACAGTGTAATTGgtgttaatataaaatttgacaTTAGCGGAGTGACTGAAGATGAGTCCAATGAGGACAGTAAAGAGTCAGATaaacagtttaaaattaaaGGTGTTACTGAAGACGAGTCCAATGATAATATCAATGATTTAAATAATAGTGGTGGAAAATTCAAAATTGGTGGTGTTACTGAGGACGAAACGTGTGATCATTTCGTGCCAGTGAAAAGAACACGTAAAGGAAGCCACGGATCAGAGTACGAAGGACGTGATAGTCCAGTGCAAAGAAAACTGAGCAGGAGTCACAGTGTTGTTTCTGACCACGACGATTCCATCATTATTTCCCAATATTTGGGACAAAGTTGTGACGAAgCCGAGGCTCGTCTCCTTGCCCGTAGGCAAGCGAGGGCTGAAGCAAGAGAGATACGTATGCGTGAACTTGAACGACAACAGAAAGAGCAAGAGGAAAACGCTGATCGACAGTATGACATGATCGAAGCTTCAAGTCGATCGACTCGAACGGTCGGCAGTAGGTATTTGTCGAGCAGAAGGAGCTCTGAGGACTCGCTTGAAGATGGAGGAAGCCTCAGGGAACTTAGACACGAGCTGAAGGAACTTGAAGAAAAATTTCGAAAGGCTATGATAGCTAATGCTCAGCTTGACAACGAGAAAGCTGCACAAACGTATCAATTAGAATTGTTAAAAGATAGGATAGAGGAAATTGAAGATGAATTGTCACGTTTGAAACGTGAACATAGGGATAAGTGTAGGGAACATGACCAGCTAAAGAGGCTGTCTGCTCGTCTAAAAGACGACTTGGCTGTGACACGTAGCGAATTGGATGAAAGGGATCGGCTAATATGCGAGAAAGGACTGGTAATTGTCATCGAAGAGGAAGAACCGCCTCTGACGGACGGTACCGTGAATGGTGAAGTTATAGCGACCCCCAAAAAAGTGCTAGTCACCGCAGAAAATGCCCAGCTGCTAGAGTCCGCGGGCGAGGGGAGTCTagACGTTCGATTAGGAAAATTCGTAGCTGAGAAGAAGGATCTTCAGGATCAAATAAATCATCTTCGATTAGAATTAgaagaagaaagaaataaaagaagaaaatccAGTGGTATTTCAAACGGACCAACGTCTGACGATTACGATTTGGACGACATACAAAGAGATGTAGTTAGACAGTTGGCCGACTTTAAATTTAGGGCTCAAAAAGCAGAACAAGACGTAGCTACCTTGCAGGCTACGGTGGCACGCCTTGAGAGTCAGGTGATAAGGTATAAGTCGGCAGCCGAGATGTACGAGAAGTCAGAGGAGGCCTTAAAACAAGAGAAAAGGAAACTCCAAAGAGAGgcGAGAGAAGCTCAGAATAGAGCAGAAGAATTGGAAACCTCAAACACTCACCTCCTCAAACGACTCGACAAACTGAAGAATGCCAAATCAGCCCTCCTCAAGGACCTCTGA
- Protein Sequence
- MCDDDCIKLTELKDDSDSCCGLSGSHGSLDSLVDILNSLDSDEENTDQHTQKIEKVRYESLISSGKEAERSAASGAVVDNTKEGSCDEQNYRLEVSLISTSEESSLVKDRNNQGKQEMDHEPTKLESVETKDAFPASRETVVPSSNITEEPTSGMTNGDLHEQSDSVIGVNIKFDISGVTEDESNEDSKESDKQFKIKGVTEDESNDNINDLNNSGGKFKIGGVTEDETCDHFVPVKRTRKGSHGSEYEGRDSPVQRKLSRSHSVVSDHDDSIIISQYLGQSCDEAEARLLARRQARAEAREIRMRELERQQKEQEENADRQYDMIEASSRSTRTVGSRYLSSRRSSEDSLEDGGSLRELRHELKELEEKFRKAMIANAQLDNEKAAQTYQLELLKDRIEEIEDELSRLKREHRDKCREHDQLKRLSARLKDDLAVTRSELDERDRLICEKGLVIVIEEEEPPLTDGTVNGEVIATPKKVLVTAENAQLLESAGEGSLDVRLGKFVAEKKDLQDQINHLRLELEEERNKRRKSSGISNGPTSDDYDLDDIQRDVVRQLADFKFRAQKAEQDVATLQATVARLESQVIRYKSAAEMYEKSEEALKQEKRKLQREAREAQNRAEELETSNTHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00031048;
- 90% Identity
- -
- 80% Identity
- -