Aful000006.1
Basic Information
- Insect
- Agonum fuliginosum
- Gene Symbol
- egg_1
- Assembly
- GCA_947534325.1
- Location
- CANNYK010000015.1:9922-20572[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5 9.6e+03 -2.2 0.0 38 58 313 333 309 350 0.84 2 2 8.8e-13 5.6e-09 37.0 0.1 5 70 572 630 569 635 0.89
Sequence Information
- Coding Sequence
- ATGAAAAATCTTCCAAAGGCAAATTCTAACCCTAACGCTGCCGAAATTGTTCTCCTAGACGAAGAGAACGAAGATAATCCTTCTGAAATGGTAGCTACAACATCAAACAGCAACAAAAGTGATCCAGAAGTTATAGATTTAGATAATTATGATATATTAGGAAAAAAGAAGCGAAAACGTTCAGCAAACAACAACTGTGTCAACATTGAATGCGAAAGCGGTGAGAAGTTGAGACCAGCTACAATATTTTGCTTGAATTACTACCGGATTAAGATCAAACCGCACAAAAACCAAGAAATCTGTGAGGAGTGTTACGAGAAAACTCTACTGTATTATGAGGAATTATCAAACAGCTTACAAAACGGCGAATGCCTCATCAATCAAAAACTTCCAACTCATGATGAATATGTCGAAATCGATTCTGATGATTCATCAGACGACATTTTAGATATTTGCGTCCCAGGTGTTACAAGCTGTAAAATATCAGATGAACTCAACGAATATCTAGCAACAGAACTTCCTGACATTCTCAATGAAGTAGTCGACAAATTCGACTTGGAAAATCAGTTAAATGAAGGTACAACTCTACTAGCAGAACGCCAAGACAAATTACAAGAAGGAATCGATAGTTTGTTTGCCGAAGAAAATGATTTACAAACTCGATTGGACAAAATACGTTCAGAGTTATACACAGAGTTCCAGAAAAAGTCTGAAGAGCTGCCTCCACTTGACTTGGACACAGAAGCACAACCTCTAGAAAAGTTAAATATCCAACCACAATCACCCAGAAAAGAAGCTGAGCGGCGTAGCCATCGAAATATCGCTAAACCCGCGTCGTACTGCGAAATCATCGAAGATGTTGACACTCCAGAAGTCGTTGCAATTCCGTCTACCAGTTTTGCAGAAATACAAACTCCAATACTAAATAACATCCCGCCGAGTGGCAAACTATTGAAAGCTAGGCCTCAAATCGGAGAAGTTTATTTCGCTCAAAGGCAATCCATATTCGGGGCGTGGGGCAAAGTCAAACTGCTAGAAATAGAAACTGTTCTGGTAGTTTGTGAAAGTTCTAAGAACATTTGGGAAGATATTCATCCGAATTCACAGACGTTCATTAAGAAGTACTTAGAGACGTATCCGGAACGACCGTTAGTAAAAGTAAAACAAGATCAAGTGGTGAAGACAGAGTGGAACGGAAAGTGGTGGATCGGTCGGGTGTTAAGAGTCGATTGTAGTCTAGTTCACATGTATTTCGATGCAGATAACCGCAGTGAATGGATCTACAGAGTTTCTACGAGGCTTGGGCCATTATTCTTAGAGGTGCAAGCAGCAGCCGCACGGCAGGAAAAGGGGCCCCACATCCCTAAGATCCAGCAGAAGAGCAACAAGAACACGGCGGAGCCCTACGTGGAGTATCCTAAGCCACCGGAGGCGGACGCTACGATGGAAGTGACGCCGGTGGCTGCAGCTGCGGCTGAGCCCCCGGCGCCCCGCGCGGTCGCACGGAAGTCCACCACTAGGCCCCCCAACACCCTCCCTCAGCCGGTCAACATGGTGCCGTTCTTACCGACGCCGCAAGTCCAACAACCCCAAAGCAAAGTTGTGTATTTCACACCGAAATCAGTGAACCCTTTGAAGGCCTTCGTACCTCACACCTGCTCACCAGAGTGTTCTAAACTGGTTTCTCTACCTCTGGCAGCTCTGAAAGGCTACAACCCGCTATCAAAACCGCTTTTAATCGGCTGGCACAGGCAACTATTTAAATACCGAGGCAAGAAGGGCATCAGATACCGCGCTCCATGCGGCAGAACCCTCCGCAACATGTCCGAACTGCACAAGTACTTACGTCTCACCCAATCGGAAATGTCGGTAGACAACTTCGATTTCGACTTTTGGGTTCACACTTTAGCGGAGTTTGTTCTCGATAAGACTTTCAGAAGCAAACGAGACATTTCTAGTGGGGTGGAAAACGTGCCGATTCCTTGCGTGAACTATGTAGACGCCTCGATGCCTGATTTTATTAGTTATTCCACCAAATGCGAGCCGCAAGAAGGAGTCAATCTCAACTTGGACCCCGAGTTTCTCTGCGGTTGTGATTGTACTGATGATTGCAGTGATAAGACCAAATGCGCGTGCTGGCAGATGACAATTCGCGAGGCTAGAACGCTAAATAAACGAGTACCAGAAGAACTCATCGGATATACGTATAAACGTTTGCCTGATTGCGTCACTACCGGTATTTACGAATGTAACTCACGGTGCAAATGCGCCAAGACTTGCCTCAATCGTGTCGTGCAACATCCCTTGCAGTTAAAGTTGCAATTATTCAAAACTGCGAACCGTGGATGGGGCATTCGTTGCTTGAACGATATTCCACATGGCGCATTTATTTGTATATATGCCGGCTCCTTATTGACAGACAAAATGGCCAACGAGGGCGGTGTGAACTACGATGGATATGAATCCGATGTGACCGATATAGAATCCGATAAAAATTCTAACAGCGACAACGATTCAGAGTTCGATGAATTCGAGCACAAAAACTATTCTAGCAAGTCTAGAAGCACAGTCACAACTCGAAGTAGATATCAAAGAGATGTCTCGCCGCCTAAGATATCTTCTCCCACTTCTGAAACTGTTACAATTTCAGACGACGAGGAAACAATTCGCGAAAAGTCGAGTTTTATTCCTTCCACTCAAACCGAGGACCAAATCCCGGTCTCCAAGTTCAAATCGGTTAGGAAAATGTTCGGCGAAGATGAAGTATGCTATATTATGGACGCTAAAAACACCGGAAATGTTGGGAGGTTTCTAAATCATAGTAGCAGCccaaatgtgttcgtacaaaacgtttttgtagacacgcacgatcttcggtttccgtgggttgcgtttttcgccatgaattacattcgagccggaacggaattaacttggaattacaactatgatgttggaagtgtccccggaaaagttattttctgtcattgcggtagccctgactgtagaggaaggttgttgtaa
- Protein Sequence
- MKNLPKANSNPNAAEIVLLDEENEDNPSEMVATTSNSNKSDPEVIDLDNYDILGKKKRKRSANNNCVNIECESGEKLRPATIFCLNYYRIKIKPHKNQEICEECYEKTLLYYEELSNSLQNGECLINQKLPTHDEYVEIDSDDSSDDILDICVPGVTSCKISDELNEYLATELPDILNEVVDKFDLENQLNEGTTLLAERQDKLQEGIDSLFAEENDLQTRLDKIRSELYTEFQKKSEELPPLDLDTEAQPLEKLNIQPQSPRKEAERRSHRNIAKPASYCEIIEDVDTPEVVAIPSTSFAEIQTPILNNIPPSGKLLKARPQIGEVYFAQRQSIFGAWGKVKLLEIETVLVVCESSKNIWEDIHPNSQTFIKKYLETYPERPLVKVKQDQVVKTEWNGKWWIGRVLRVDCSLVHMYFDADNRSEWIYRVSTRLGPLFLEVQAAAARQEKGPHIPKIQQKSNKNTAEPYVEYPKPPEADATMEVTPVAAAAAEPPAPRAVARKSTTRPPNTLPQPVNMVPFLPTPQVQQPQSKVVYFTPKSVNPLKAFVPHTCSPECSKLVSLPLAALKGYNPLSKPLLIGWHRQLFKYRGKKGIRYRAPCGRTLRNMSELHKYLRLTQSEMSVDNFDFDFWVHTLAEFVLDKTFRSKRDISSGVENVPIPCVNYVDASMPDFISYSTKCEPQEGVNLNLDPEFLCGCDCTDDCSDKTKCACWQMTIREARTLNKRVPEELIGYTYKRLPDCVTTGIYECNSRCKCAKTCLNRVVQHPLQLKLQLFKTANRGWGIRCLNDIPHGAFICIYAGSLLTDKMANEGGVNYDGYESDVTDIESDKNSNSDNDSEFDEFEHKNYSSKSRSTVTTRSRYQRDVSPPKISSPTSETVTISDDEETIREKSSFIPSTQTEDQIPVSKFKSVRKMFGEDEVCYIMDAKNTGNVGRFLNHSSSPNVFVQNVFVDTHDLRFPWVAFFAMNYIRAGTELTWNYNYDVGSVPGKVIFCHCGSPDCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028755;
- 90% Identity
- -
- 80% Identity
- -