Basic Information

Insect: Agonopterix heracliana
Gene Symbol: -
Assembly: GCA_963693445.1
Location: OY856336.1:2081928-2084300[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.027 3.9e+02 2.0 0.1 16 48 56 89 47 95 0.81

2 11 0.00094 14 6.6 0.1 26 48 98 120 91 124 0.88

3 11 0.045 6.6e+02 1.2 0.0 23 48 125 150 123 157 0.86

4 11 2.4e-05 0.35 11.7 0.1 26 49 159 182 149 186 0.85

5 11 0.0075 1.1e+02 3.7 0.2 26 48 188 210 183 214 0.87

6 11 0.11 1.7e+03 -0.1 0.0 26 48 219 241 207 243 0.88

7 11 0.0071 1e+02 3.8 0.1 27 50 421 444 413 448 0.86

8 11 8.3e-05 1.2 10.0 0.1 22 49 473 500 469 503 0.86

9 11 0.016 2.3e+02 2.7 0.2 26 48 506 528 501 531 0.87

10 11 0.47 6.9e+03 -2.0 0.0 27 50 567 590 564 593 0.81

11 11 0.28 4.1e+03 -1.3 0.1 27 45 633 651 629 655 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.027	3.9e+02	2.0	0.1	16	48	56	89	47	95	0.81
2	11	0.00094	14	6.6	0.1	26	48	98	120	91	124	0.88
3	11	0.045	6.6e+02	1.2	0.0	23	48	125	150	123	157	0.86
4	11	2.4e-05	0.35	11.7	0.1	26	49	159	182	149	186	0.85
5	11	0.0075	1.1e+02	3.7	0.2	26	48	188	210	183	214	0.87
6	11	0.11	1.7e+03	-0.1	0.0	26	48	219	241	207	243	0.88
7	11	0.0071	1e+02	3.8	0.1	27	50	421	444	413	448	0.86
8	11	8.3e-05	1.2	10.0	0.1	22	49	473	500	469	503	0.86
9	11	0.016	2.3e+02	2.7	0.2	26	48	506	528	501	531	0.87
10	11	0.47	6.9e+03	-2.0	0.0	27	50	567	590	564	593	0.81
11	11	0.28	4.1e+03	-1.3	0.1	27	45	633	651	629	655	0.84

Sequence Information

Coding Sequence: ATGTTCAATTCCCTGGACTTTGTCTGCGACTATTGCAGTCGCACgttcacaagaaaatacaaccTACTAACGCACATAGAAAACTGCCACATAAACTTTTCATGTAACTGCGAGATTTGCGGTCAAAGCTTCGGCAGTCCGGCCGGATTGCAACTACATTTGAGCAGAGGCCACAATAGATACGAACAACCGTTCCCAGAATGTGATATTTGTGGACGTATTTTCACTAGAAAACAGAATATTATGTCGCATATGATTACGGTGCATCTACAAGGTATCGGACCAGAAATTAGGTGTAAATTTTGTGAAAAGGTTTTCACTACCGAAAGGAATTTAAAAAGGCATGTCAATCAATTGCACAATCCAGACGTTCAATATCCGACTTGTGACGTGTGTAAGAAAGTTTTCAAAGGGAAACACTCGCTTATAGCTCACATACAAGCTACACACAACACTTCAGAAAAGGGTGTAATCAGATGTGAACtctgtaataaaatttataccAACAACCGAAATTTGAAACGGCATATTGAGATGTTCCACGGAGAAAAGGAAGAATTCAAATGTGATATTTGCCCAAAAGTTTACACATCGAATCAGAGTTTAAGAAGACATGCTCGCACCGCTCACAATACTGAAGATCAAGAGGAACTTAAGTGTGAATTTTGCTCGAAATTGATCAACGGGAAAGATAATTTAGACAGTCATATTCAAGTACACCACGGAGAGAGTTTAAACTTTAGTGACTGTATTGACACGGATGAAATTAACAATGTGACTTGTGAAAAATGCGGCAGAGATTTCCAAGATGAACCTTTATTGAGGCAACATGTTAAAAATGAGCATTCCTTTAAAACGTTCtacaaatattgtaaaaaatttcTCGTGAACCAATTAGGTAATATCACACCGAAAATTAAAAGTGAAAATTACTTTCAGAACTGTGAATTTTGTAGTCACGCGTTCGATAGCGTATTTCAACTAAAAGATCACATGAGAGTCAATCATGATAGACAATACTCTTTGTCATCGTGTAACGTATGTTTTAATAAGTTTTATAGTAAAGAATCTATGCGAgaacacaaaaaaatatgtgtacCACCAGCCAATGCTAACCCATGCAGTCATTGTGATAAATTGTTCACTGACGTCTCAAGTTTAGAATTTCATACAAGAATATTTCATCCGCAAGCTCAAATAGCCGATTCTAACATTTCTTCAACTAATGTAGACGATTCAATGGATGCTGGTTGTTACAAATGTATGCACTGTAATAGAGTTTACTATAGCGATAGATCGTTAAAACATcatattaaattaaagcatACGACAGACGAAGCTGTTGAATGTGAAATTTGTGGAAAAATTTGCAGTAATAAGTATTATTTGGCGTCACATTTCAAAATTGTTCACAGCGATTCTTGGTCGAAATGTGACTATTGTGATAAACAGTTTAAATCTAAACGTAACATCAGAAGGCATATTGAATACACACATATGGGAATGCAACGATACAAGTGCATAGAATGTGAAACgctttttaaagaaaaacgtAGTCTTCGTAAGCATGTAAGGACTAAGCATCCGAACTCGGTCATCTTCCCACAATGCCAATTTTGTCATAAACGATTTGAGTCCGCGAAATCCTGTAAAATACATTTGAAGTTACTGCATTCGTTCAATATGAATACGTATCCGTGTGATCTTTGTTCCGTTTCCTTTAGCTCAAAGGAAGCTTTAAGCATACATTTACAAACCAAACATTTGGCTGAAGATGAGATTTATAAATGTGAAGATTGCAACTTAGTTTTTAAAGGGCAGGAAAAATTCGAGCAGCACAATGAAGTATATCATGTCAATGTAGTAACGAATGTTAAACAAAAAGTGTTGCCACGTTGCATTATCTGTATGAAAGATTTCAGTACGAGGAAAACTTTAAAAAGACACATTAAGAAATTCCATGACGGTTTCGATGCCGAAGAACTAGCAAATTTCGGTTCCAAGAAACGAATTTTCAGCATTGAATGCGATGACTGCATTAAAAATTTCAACGACGActtctattttaatatttatcaaAAGTTAAAGCATATTAGAGactcgattatttttaaatgtgaaaCGTGTAAGTCGTCATATAATATATTGGAGTATTCGATACAGAGGTATAAGTTGACGAATTCAGATTTGTGTAAAAGTAAAATGATTTTGAGTGAGTTGTGTACGACTGAGATGAGCGAAGAGGATGAATATTCAGGGTTTGGTTCGTTTCATGAGATGATGGAACCAGAGAGTACAACGCAAGACATCATTATTAAACAGGAAATAGACACTTTTGAATATGATATAAAGTCTGAACCTATGTCCCCTTGA
Protein Sequence: MFNSLDFVCDYCSRTFTRKYNLLTHIENCHINFSCNCEICGQSFGSPAGLQLHLSRGHNRYEQPFPECDICGRIFTRKQNIMSHMITVHLQGIGPEIRCKFCEKVFTTERNLKRHVNQLHNPDVQYPTCDVCKKVFKGKHSLIAHIQATHNTSEKGVIRCELCNKIYTNNRNLKRHIEMFHGEKEEFKCDICPKVYTSNQSLRRHARTAHNTEDQEELKCEFCSKLINGKDNLDSHIQVHHGESLNFSDCIDTDEINNVTCEKCGRDFQDEPLLRQHVKNEHSFKTFYKYCKKFLVNQLGNITPKIKSENYFQNCEFCSHAFDSVFQLKDHMRVNHDRQYSLSSCNVCFNKFYSKESMREHKKICVPPANANPCSHCDKLFTDVSSLEFHTRIFHPQAQIADSNISSTNVDDSMDAGCYKCMHCNRVYYSDRSLKHHIKLKHTTDEAVECEICGKICSNKYYLASHFKIVHSDSWSKCDYCDKQFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSVIFPQCQFCHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSKEALSIHLQTKHLAEDEIYKCEDCNLVFKGQEKFEQHNEVYHVNVVTNVKQKVLPRCIICMKDFSTRKTLKRHIKKFHDGFDAEELANFGSKKRIFSIECDDCIKNFNDDFYFNIYQKLKHIRDSIIFKCETCKSSYNILEYSIQRYKLTNSDLCKSKMILSELCTTEMSEEDEYSGFGSFHEMMEPESTTQDIIIKQEIDTFEYDIKSEPMSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00027984;
90% Identity: iTF_00027984;
80% Identity: iTF_00027984;