Aher025911.2
Basic Information
- Insect
- Agonopterix heracliana
- Gene Symbol
- -
- Assembly
- GCA_963693445.1
- Location
- OY856336.1:2081928-2084300[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.3e-05 0.00087 20.3 3.8 1 23 7 30 7 30 0.95 2 20 0.00019 0.013 16.6 0.2 2 23 36 58 33 58 0.89 3 20 1.3e-05 0.00088 20.3 0.2 2 23 67 89 67 89 0.97 4 20 1.5e-05 0.0011 20.0 1.5 2 23 98 120 97 120 0.94 5 20 9.2e-05 0.0063 17.6 0.8 2 23 128 150 128 150 0.94 6 20 8.6e-06 0.00059 20.8 0.9 2 23 159 181 158 181 0.96 7 20 4.1e-07 2.8e-05 25.0 0.5 1 23 187 210 187 210 0.98 8 20 0.1 6.9 8.0 0.8 2 23 219 240 218 241 0.94 9 20 0.0022 0.15 13.3 0.2 2 23 260 282 259 282 0.95 10 20 0.0053 0.36 12.1 1.5 3 23 315 336 313 336 0.96 11 20 0.43 29 6.0 0.9 2 21 344 363 343 364 0.93 12 20 0.013 0.9 10.8 1.4 3 23 374 395 373 395 0.95 13 20 0.0091 0.63 11.3 6.3 1 23 419 442 419 442 0.97 14 20 0.00012 0.0081 17.3 0.6 2 23 449 471 448 471 0.95 15 20 3.9e-05 0.0027 18.8 2.2 2 23 477 499 476 499 0.94 16 20 0.0092 0.63 11.3 2.2 1 23 505 528 505 528 0.97 17 20 1.1 76 4.8 6.0 2 23 536 558 536 558 0.95 18 20 8.4e-05 0.0058 17.7 0.2 1 23 565 588 565 588 0.98 19 20 0.0013 0.086 14.0 0.6 1 23 595 618 595 618 0.93 20 20 0.021 1.5 10.1 2.7 3 23 633 654 632 654 0.91
Sequence Information
- Coding Sequence
- ATGTTCAATTCCCTGGACTTTGTCTGCGACTATTGCAGTCGCACgttcacaagaaaatacaaccTACTAACGCACATAGAAAACTGCCACATAAACTTTTCATGTAACTGCGAGATTTGCGGTCAAAGCTTCGGCAGTCCGGCCGGATTGCAACTACATTTGAGCAGAGGCCACAATAGATACGAACAACCGTTCCCAGAATGTGATATTTGTGGACGTATTTTCACTAGAAAACAGAATATTATGTCGCATATGATTACGGTGCATCTACAAGGTATCGGACCAGAAATTAGGTGTAAATTTTGTGAAAAGGTTTTCACTACCGAAAGGAATTTAAAAAGGCATGTCAATCAATTGCACAATCCAGACGTTCAATATCCGACTTGTGACGTGTGTAAGAAAGTTTTCAAAGGGAAACACTCGCTTATAGCTCACATACAAGCTACACACAACACTTCAGAAAAGGGTGTAATCAGATGTGAACtctgtaataaaatttataccAACAACCGAAATTTGAAACGGCATATTGAGATGTTCCACGGAGAAAAGGAAGAATTCAAATGTGATATTTGCCCAAAAGTTTACACATCGAATCAGAGTTTAAGAAGACATGCTCGCACCGCTCACAATACTGAAGATCAAGAGGAACTTAAGTGTGAATTTTGCTCGAAATTGATCAACGGGAAAGATAATTTAGACAGTCATATTCAAGTACACCACGGAGAGAGTTTAAACTTTAGTGACTGTATTGACACGGATGAAATTAACAATGTGACTTGTGAAAAATGCGGCAGAGATTTCCAAGATGAACCTTTATTGAGGCAACATGTTAAAAATGAGCATTCCTTTAAAACGTTCtacaaatattgtaaaaaatttcTCGTGAACCAATTAGGTAATATCACACCGAAAATTAAAAGTGAAAATTACTTTCAGAACTGTGAATTTTGTAGTCACGCGTTCGATAGCGTATTTCAACTAAAAGATCACATGAGAGTCAATCATGATAGACAATACTCTTTGTCATCGTGTAACGTATGTTTTAATAAGTTTTATAGTAAAGAATCTATGCGAgaacacaaaaaaatatgtgtacCACCAGCCAATGCTAACCCATGCAGTCATTGTGATAAATTGTTCACTGACGTCTCAAGTTTAGAATTTCATACAAGAATATTTCATCCGCAAGCTCAAATAGCCGATTCTAACATTTCTTCAACTAATGTAGACGATTCAATGGATGCTGGTTGTTACAAATGTATGCACTGTAATAGAGTTTACTATAGCGATAGATCGTTAAAACATcatattaaattaaagcatACGACAGACGAAGCTGTTGAATGTGAAATTTGTGGAAAAATTTGCAGTAATAAGTATTATTTGGCGTCACATTTCAAAATTGTTCACAGCGATTCTTGGTCGAAATGTGACTATTGTGATAAACAGTTTAAATCTAAACGTAACATCAGAAGGCATATTGAATACACACATATGGGAATGCAACGATACAAGTGCATAGAATGTGAAACgctttttaaagaaaaacgtAGTCTTCGTAAGCATGTAAGGACTAAGCATCCGAACTCGGTCATCTTCCCACAATGCCAATTTTGTCATAAACGATTTGAGTCCGCGAAATCCTGTAAAATACATTTGAAGTTACTGCATTCGTTCAATATGAATACGTATCCGTGTGATCTTTGTTCCGTTTCCTTTAGCTCAAAGGAAGCTTTAAGCATACATTTACAAACCAAACATTTGGCTGAAGATGAGATTTATAAATGTGAAGATTGCAACTTAGTTTTTAAAGGGCAGGAAAAATTCGAGCAGCACAATGAAGTATATCATGTCAATGTAGTAACGAATGTTAAACAAAAAGTGTTGCCACGTTGCATTATCTGTATGAAAGATTTCAGTACGAGGAAAACTTTAAAAAGACACATTAAGAAATTCCATGACGGTTTCGATGCCGAAGAACTAGCAAATTTCGGTTCCAAGAAACGAATTTTCAGCATTGAATGCGATGACTGCATTAAAAATTTCAACGACGActtctattttaatatttatcaaAAGTTAAAGCATATTAGAGactcgattatttttaaatgtgaaaCGTGTAAGTCGTCATATAATATATTGGAGTATTCGATACAGAGGTATAAGTTGACGAATTCAGATTTGTGTAAAAGTAAAATGATTTTGAGTGAGTTGTGTACGACTGAGATGAGCGAAGAGGATGAATATTCAGGGTTTGGTTCGTTTCATGAGATGATGGAACCAGAGAGTACAACGCAAGACATCATTATTAAACAGGAAATAGACACTTTTGAATATGATATAAAGTCTGAACCTATGTCCCCTTGA
- Protein Sequence
- MFNSLDFVCDYCSRTFTRKYNLLTHIENCHINFSCNCEICGQSFGSPAGLQLHLSRGHNRYEQPFPECDICGRIFTRKQNIMSHMITVHLQGIGPEIRCKFCEKVFTTERNLKRHVNQLHNPDVQYPTCDVCKKVFKGKHSLIAHIQATHNTSEKGVIRCELCNKIYTNNRNLKRHIEMFHGEKEEFKCDICPKVYTSNQSLRRHARTAHNTEDQEELKCEFCSKLINGKDNLDSHIQVHHGESLNFSDCIDTDEINNVTCEKCGRDFQDEPLLRQHVKNEHSFKTFYKYCKKFLVNQLGNITPKIKSENYFQNCEFCSHAFDSVFQLKDHMRVNHDRQYSLSSCNVCFNKFYSKESMREHKKICVPPANANPCSHCDKLFTDVSSLEFHTRIFHPQAQIADSNISSTNVDDSMDAGCYKCMHCNRVYYSDRSLKHHIKLKHTTDEAVECEICGKICSNKYYLASHFKIVHSDSWSKCDYCDKQFKSKRNIRRHIEYTHMGMQRYKCIECETLFKEKRSLRKHVRTKHPNSVIFPQCQFCHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSKEALSIHLQTKHLAEDEIYKCEDCNLVFKGQEKFEQHNEVYHVNVVTNVKQKVLPRCIICMKDFSTRKTLKRHIKKFHDGFDAEELANFGSKKRIFSIECDDCIKNFNDDFYFNIYQKLKHIRDSIIFKCETCKSSYNILEYSIQRYKLTNSDLCKSKMILSELCTTEMSEEDEYSGFGSFHEMMEPESTTQDIIIKQEIDTFEYDIKSEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00028368; iTF_00027964;
- 90% Identity
- iTF_00028368; iTF_00027964;
- 80% Identity
- iTF_00028368; iTF_00027964;