Avir007014.1
Basic Information
- Insect
- Agapostemon virescens
- Gene Symbol
- pnr
- Assembly
- GCA_028453745.1
- Location
- CM052087.1:14760911-14763257[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-18 1.8e-14 53.7 3.2 1 34 182 214 182 216 0.97 2 2 6.4e-19 2.7e-15 56.4 6.2 1 35 236 269 236 270 0.98
Sequence Information
- Coding Sequence
- ATGTTCCACGGCGGCGGAAGCGGTGGATACGGTGGTGCGAGTTCCGACTATCAACAGCAGTCTCAGCAACAGCAGCAACAACACGGGCAGCAACTCCAAGCGCCGGTTTACGTGCCGTCGTCGAGGCCGACGATTCCATCGGCAGCGACGGCGGCGGCGGCCGCTGCCGCGGCGGCTCAGTATCACTCGTTCCCGGGTTCCGGTTCACCCGCCTGGGAGAAGACTGCGGCTTCCTGGCAGCATGGAGTGGAAACGTACGCGGCTCATCACGCGCTCGCCGGACACGCGAGCGGATCGGCGTCGGCCGCCGCGGCCGCGGCCGCTGCGGCGGCCATGGGCCCTCATTCCGGACACGCGCATCCGCACGCGGCCCATCCGCACACCGGGCATCCGCACTCGAGTCTCGCCGCAGCCGCGGCAGCCCCTTTTTACGCTCAAAACGTCGCCATGATGTCGTCGTGGCGCGCGTACGACGGCGCAGGATTTCAACGGGCATCGCCGTACGACACCGCGATGGACTTTCAATTCGGCGAGGGTCGCGAGTGCGTCAATTGCGGCGCCATATCGACGCCGCTTTGGAGAAGAGACGGCACCGGGCATTATCTGTGCAACGCGTGCGGACTCTATCACAAGATGAACGGGATGAACAGACCGCTGATCAAGCCCTCGAAGAGATTGACCGCGACCAGACGACTGGGACTGTGCTGCACGAACTGCGGCACCCGAACCACCACCCTCTGGAGGCGCAACAACGAGGGCGAGCCCGTTTGCAACGCTTGCGGTCTCTATTTCAAGCTGCACGGAGTAAACAGGCCGTTGGCCATGCGAAAGGACGGTATACAGACGCGAAAACGAAAGCCGAAAAAGACGCCGGAGCCGAACGTCGTCAGACCTTCCGCCGGAGAACACGAGACCGCCACGGTTTCGACGGCCTCTTCTCCCTCCACGGaactgaaagctagccagcagcagcaacagcagcagcagcagcaacaacagcagcagcaacaacagcagcagcagcaacaacaacaacagcagcagcaacagcagcagcagcatcaacaacagcagcaatcgcaacaacaacaacagcagcaacaacatcaaatcgatggaacgaaatcgAGCGGCGGAGCCTCGAGTTCGACCGACAGACCGGTCTACTTGGGACACACGTCCTTGTTGGCGACCGGTAGCGTCGCAACCGTCAAGACGGAACCGCGAAGTTGCGACGGCATCGTGGGTCAACCTTACTCCTCATATTATCAGCATCCTCATCAACTGGGCGTCTCGACCAGCGAACATCAACAACAAACGTATTACGGGAGTCAAGAGGCGCCCTATCATCATCAACATCACGTGACCGCAGCCGCCAAGTTGCTCGCGTCTTCGTAA
- Protein Sequence
- MFHGGGSGGYGGASSDYQQQSQQQQQQHGQQLQAPVYVPSSRPTIPSAATAAAAAAAAAQYHSFPGSGSPAWEKTAASWQHGVETYAAHHALAGHASGSASAAAAAAAAAAMGPHSGHAHPHAAHPHTGHPHSSLAAAAAAPFYAQNVAMMSSWRAYDGAGFQRASPYDTAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPSKRLTATRRLGLCCTNCGTRTTTLWRRNNEGEPVCNACGLYFKLHGVNRPLAMRKDGIQTRKRKPKKTPEPNVVRPSAGEHETATVSTASSPSTELKASQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQSQQQQQQQQHQIDGTKSSGGASSSTDRPVYLGHTSLLATGSVATVKTEPRSCDGIVGQPYSSYYQHPHQLGVSTSEHQQQTYYGSQEAPYHHQHHVTAAAKLLASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169532;
- 90% Identity
- iTF_00966338; iTF_00865684; iTF_00862952; iTF_00865001; iTF_00866382; iTF_00763569; iTF_00863634; iTF_00861560; iTF_00867064; iTF_00864315; iTF_00862239;
- 80% Identity
- -